rs107656690 SNP Detail

Summary

• ID
  rs107656690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121163132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAAGCCCAT ACTTGGCCAA GGGTCTGATC CTAGAAGAAA
  TGACAATCCC AGACCTCAAA TGCAGCTTCT TAGAAAAAAA AAAGGTGCTT GAACTGTCGC
  Y
  GGCTGGAGAT CACCAACAAC AAGGAGAGCA GGGACTCATG TTCCACCCAA CCAGGCCAAG
  CTCTTTGACC CAGTGATGTC ATCTATGATG TCACTACCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135719329	ENSMUSSNP6544881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107656690					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121163132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	978 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	within coordinates
Rr397974	regulatory region 397974	706 bp upstream
Rr584057	regulatory region 584057	within coordinates
Rr584058	regulatory region 584058	137 bp proximal
Rr584059	regulatory region 584059	725 bp proximal
Rr584060	regulatory region 584060	1831 bp proximal
Tssr31438	transcription start site region 31438	99 bp upstream
Tssr31439	transcription start site region 31439	164 bp upstream