rs107655664 SNP Detail

Summary

• ID
  rs107655664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCTTCA CCGCCCGCCA
  CTGGCATTTC AGGGCCACGG ACCACACAAA TGGTGGCAGG TGAGTTCTGG ATGAAGTACG
  ACCAGCTCTG ACATTCAGCA AGCATCAAGC CTGCAATCCA TGAAATGGGT TCAGACATGA
  CCCCTTTCTC AAACAGGAAG GGCAAGGTAG AAAGTGGGGC CCTGTGGCTC TGTCCTGTGG
  Y
  TCTGTCCTGT GGCTCTGTCC TGCGGTTCTG ACCCTGTGGC TCTGTCCTGC GGTTCTGTCC
  TGCGGTTCTG TCCTGCGGTT CTGTCCTGTG GCTCTGTCCT GTGATTCTGT CCTGCGGTTC
  TGTCCTGCGG CTCTGTCCTG CGGCTCTGTC CTGCGGTTCT GTCCTGCGGT TCTGTCCTGC
  GGTTCTGTCC TGTGGTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146766667	ENSMUSSNP55194	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107655664					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639543 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	760 bp downstream
Rr427376	regulatory region 427376	448 bp distal
Rr427377	regulatory region 427377	254 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1383 bp upstream
Tssr96640	transcription start site region 96640	1520 bp upstream
Tssr96641	transcription start site region 96641	1496 bp upstream
Tssr96642	transcription start site region 96642	1465 bp upstream
Tssr96643	transcription start site region 96643	1409 bp upstream
Tssr96644	transcription start site region 96644	1313 bp upstream
Tssr96645	transcription start site region 96645	1163 bp upstream