rs107652841 SNP Detail

Summary

• ID
  rs107652841
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGCGC AGGGCCCAGA
  GCTGCAGGTC TAATTAAGGC CTTTGATACA TTGTGAATTG AGGTTTTGTA CAGGTCGAAA
  GCTTAGTTCT GTTACAAGCA CTGGAACTCC GTGCAGTGTT ACCAGAAGCA TGTGTTGAGG
  ATGCTGTCCT TTTTCTTACT GCGTGTTTTT GACACCTCTG TTAAAGATTA GGCTGCTGTA
  K
  CGAGGCAGCT GGTGGATACA GACTGCTATT CTCAACGGGG TTCTTTTGCA TTCCTGCCTC
  TTTTGTGATT GAAACGAAGT AGGTTTGAAA TCCAATCCAG GCAAAGACTG TGTGCTAGCT
  ACAGCTCTAA GAAGTATTCC CTGTCAGTGT TCTAGAAGGC ATCAGGGTTG TCCCCAGCAG
  AGAATTAGAG GATTACCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135873149	ENSMUSSNP4546489	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320957515	CHEV_3_127556839	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107652841					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647570 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1911 bp distal
Rr584884	regulatory region 584884	622 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	388 bp distal