rs107645511 SNP Detail

Summary

• ID
  rs107645511
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153567361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGGTGAA GAATGGCTTG
  GAAAGAGAGA CACAAGTATT TCTGACTGAA TGGTGCAGGC CTATGCATGG TGCCAGTTAG
  TTATACATGG GCACAGGGCA TTCCAAGAGA TTAGTTGCTT GAATTAATTG AAGTTAATTT
  AAGGTATGCA GTATCTAGGA GGAGGAATTA GAGCGGATAC GGGGCAGTAA TGAGGTGGTG
  W
  GTGCAGAAGG GGCTGAGGTG GTTGATTATG ATGCTGTGTC CCAGAAGGTG CCATCTGGTG
  AGAAAACAAA TGAAGGTGGT GGCAGTGACC TTTGCGGTTT GTAGCATGGC AGGATATTTG
  AGCCTTTGTT TATGCATTTG GTGGCTTCCA GGCTAGGATG ATGGGATAGC GTCAGTGAGC
  TGTGCTGGGT GACAGAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148002245	ENSMUSSNP5755564	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss320564631	CHEV_2_153551177	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107645511					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153567361 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	651 bp downstream
Rr567732	regulatory region 567732	1983 bp distal
Rr567733	regulatory region 567733	613 bp distal