rs107642559 SNP Detail

Summary

• ID
  rs107642559
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108476448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATCTGTGT AGGGTCAGAA GACAACTTCT GGAAGTTGCC
  TTAGTAAGGC AGTTTATGAG TCAGAGTTCT TACTATGTAG CCCTGGCTGG CCTAAACTAG
  A
  CCAGCTGCAG GCAAACTAAA GGACTCTGCC TCTGCCTCCC GAGTGCTGAG ATTTAATGCA
  TGCGCCACCA CGAGGGCTGC AGAACTGATC TATCAGAAC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147188592	ENSMUSSNP3855436	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs107642559					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108476448 () rs orientation: forward

Symbol	Name	Function Class
Cc2d1b	coiled-coil and C2 domain containing 1B	689 bp upstream
Cpgi14562	CpG island 14562	90 bp proximal
Gm12743	predicted gene 12743	within coordinates
Rr597201	regulatory region 597201	906 bp distal
Rr597202	regulatory region 597202	within coordinates
Rr597203	regulatory region 597203	588 bp proximal
Rr597204	regulatory region 597204	700 bp proximal
Tssr38307	transcription start site region 38307	674 bp upstream
Tssr38308	transcription start site region 38308	758 bp upstream