rs107629478 SNP Detail

Summary

• ID
  rs107629478
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149393116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGGGTT ACCAGGGCTC
  ATAAGAACAC AAAAGCTCTA TGAGCCATGT TTTTTAAAAA TCAGATTTAG GTTCAGCTCA
  AATGAAAAGC CCCACAGACG TTCATAAGCA GCTCAATTCA GTGCTTAGTA AAATATCACA
  ATGACAACCT GCCAATCACA CTGCATTTTA AGGTTAGAGG ATGTGGTTTG GATTTATTAG
  M
  AGAAATTGAA AGTAAGATTT TTTTTTTTCT CTCAACCCTG ACTTTAATAC AGAATTACTG
  GGTAGAGAAA GGCCTACACA CTAAAACGTG AGAATTAACT TTCTACACTA ACGACTCTGG
  GCAATCACCA TGCCACTGAA GTTCCAGACT CCCACTATTC CACATTCATT GGACACTTCT
  CATTGTGTTT ATTTACTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148031083	ENSMUSSNP89138	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107629478					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149393116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15323	CpG island 15323	217 bp distal
Kif1b	kinesin family member 1B	966 bp upstream
Rr398866	regulatory region 398866	683 bp downstream
Rr604876	regulatory region 604876	1164 bp distal
Rr604877	regulatory region 604877	1329 bp distal
Rr604878	regulatory region 604878	477 bp distal
Rr604879	regulatory region 604879	730 bp distal
Rr604880	regulatory region 604880	935 bp proximal
Tssr44642	transcription start site region 44642	956 bp upstream
Tssr44643	transcription start site region 44643	921 bp upstream