rs107622180 SNP Detail

Summary

• ID
  rs107622180
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GGATCCCAGC ATCACCTGCA TGTCTGCTCC ACTCCAGACC
  TACAGTCTCC AGCCCCAAGC ACACCCAGTG GTCCCTACCC CAACACCATC AACCCTGCTT
  C
  TGAAGTTCTA TGCACTTCGG CTCTTTCTGC CTGGTTCAAG ATTACTTTCT GTGTTTTGTG
  TTTCTCCTTT CTCCCCATTG CAGTTCAGTC TCTTGGGCAG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146194052	ENSMUSSNP3091642	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107622180					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342067 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	486 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1263 bp downstream
Rr396591	regulatory region 396591	166 bp downstream
Rr423601	regulatory region 423601	1298 bp distal
Rr423602	regulatory region 423602	1465 bp distal
Rr423603	regulatory region 423603	497 bp distal
Rr423604	regulatory region 423604	362 bp distal
Rr423605	regulatory region 423605	within coordinates
Rr423606	regulatory region 423606	408 bp proximal
Tssr302	transcription start site region 302	488 bp upstream
Tssr10235	transcription start site region 10235	1243 bp downstream
Tssr10236	transcription start site region 10236	353 bp downstream
Tssr15228	transcription start site region 15228	520 bp upstream