rs107616214 SNP Detail

Summary

• ID
  rs107616214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116454678 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T AATAGAAAGG TCTGTGTTTT GTTTTTTTTT TGGGTGGTTT
  TTTTTTTTTT TTTCCTTCGA GACAGGGTTT CTCTGTGTAG CCCTGGCTAT CCTGGAACTC
  R
  CTTTGTAGAC CAGGCTGGCC TCAAACTCAG AAATCTGCCT GCTTCTGCCT CCTGAGTGCT
  GGGATTAAAG GCGTGTGCCA CCATACCCGG CAGGTCTGTG T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146930728	ENSMUSSNP5595303	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107616214					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116454678 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	741 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1471 bp upstream
Rr583758	regulatory region 583758	405 bp proximal
Rr583759	regulatory region 583759	1638 bp proximal
Tssr31364	transcription start site region 31364	732 bp upstream
Tssr35323	transcription start site region 35323	1688 bp upstream
Tssr35324	transcription start site region 35324	1063 bp downstream
Tssr35325	transcription start site region 35325	1241 bp downstream
Tssr35326	transcription start site region 35326	1508 bp downstream
Tssr35327	transcription start site region 35327	1525 bp downstream
Tssr35328	transcription start site region 35328	1542 bp downstream
Tssr35329	transcription start site region 35329	1561 bp downstream
Tssr35330	transcription start site region 35330	1614 bp downstream