rs107599072 SNP Detail

Summary

• ID
  rs107599072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153564940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAGGCTT TTCTTTAAAC
  TGTTTTATTT CCCTGAGCAC TGGATTTAGC TGCACTACAC TTCCTGGAGC TTCTTTTCTC
  TTCAGACTAT GCATATTCTA GTTCTCTTTA TCTAGCTTGC TCCTTTTCAT TATAGATCTG
  CATAAAATTG ATTACTGGTA ACCACACTAC TCAGTCATCT TGCAATACCC TCTGTCAAAG
  R
  CCTTCATCCA GAAACTCTTC AATTTAGCCT CTGGCAGATT TTTAGGACAA GAGCAGAAAG
  CAGCCACATT CTTTGTCAAA ACAGCACAAG AATGGTCTCT AGACTAGTTG TTAATATTCT
  CCCCTTCTGA AACTTCTTGA GCTAGGCCCA CATTGCTCTC AGCATTGCTG TCCATACTCC
  TACTAGGGTG CCCCAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002167	ENSMUSSNP3759024	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320564606	CHEV_2_153548756	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107599072					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153564940 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	132 bp proximal
Rr567733	regulatory region 567733	1369 bp proximal