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JS139, JS136 Primer Detail
Primers
  • Name
    JS139, JS136
  • Primer 1 Sequence
    GTTTACCACTTAGAACACAG
  • Primer 2 Sequence
    CTGGAACTCACTCTGAAGAC
  • ID
    MGI:804
Genes
Iap3rc1 intracisternal A-type particle, U3 region, SINE repeat c-1
Iap3rc10 intracisternal A-type particle, U3 region, SINE repeat c-10
Iap3rc11 intracisternal A-type particle, U3 region, SINE repeat c-11
Iap3rc12 intracisternal A-type particle, U3 region, SINE repeat c-12
Iap3rc13 intracisternal A-type particle, U3 region, SINE repeat c-13
Iap3rc14 intracisternal A-type particle, U3 region, SINE repeat c-14
Iap3rc15 intracisternal A-type particle, U3 region, SINE repeat c-15
Iap3rc16 intracisternal A-type particle, U3 region, SINE repeat c-16
Iap3rc17 intracisternal A-type particle, U3 region, SINE repeat c-17
Iap3rc18 intracisternal A-type particle, U3 region, SINE repeat c-18
Iap3rc19 intracisternal A-type particle, U3 region, SINE repeat c-19
Iap3rc2 intracisternal A-type particle, U3 region, SINE repeat c-2
Iap3rc20 intracisternal A-type particle, U3 region, SINE repeat c-20
Iap3rc21 intracisternal A-type particle, U3 region, SINE repeat c-21
Iap3rc22 intracisternal A-type particle, U3 region, SINE repeat c-22
Iap3rc23 intracisternal A-type particle, U3 region, SINE repeat c-23
Iap3rc24 intracisternal A-type particle, U3 region, SINE repeat c-24
Iap3rc25 intracisternal A-type particle, U3 region, SINE repeat c-25
Iap3rc26 intracisternal A-type particle, U3 region, SINE repeat c-26
Iap3rc27 intracisternal A-type particle, U3 region, SINE repeat c-27
Iap3rc28 intracisternal A-type particle, U3 region, SINE repeat c-28
Iap3rc3 intracisternal A-type particle, U3 region, SINE repeat c-3
Iap3rc4 intracisternal A-type particle, U3 region, SINE repeat c-4
Iap3rc5 intracisternal A-type particle, U3 region, SINE repeat c-5
Iap3rc6 intracisternal A-type particle, U3 region, SINE repeat c-6
Iap3rc7 intracisternal A-type particle, U3 region, SINE repeat c-7
Iap3rc8 intracisternal A-type particle, U3 region, SINE repeat c-8
Iap3rc9 intracisternal A-type particle, U3 region, SINE repeat c-9
Polymorphisms
J:21511 Kaushik N, et al., Mamm Genome. 1994 Nov;5(11):688-95
Endonuclease Gene Allele Fragments Strains
Iap3rc1 b 132bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc2 b 143bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rc3 b 159bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc4 b 178bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc5 b 207bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rc6 b 265bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc7 b 283bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rc8 b 297bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc9 b 360bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc10 b 365bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc11 b 430bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rc12 b 500bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rc13 b 505bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc14 b 1100bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rc15 b 114bp BALB/cJ
s absent M. spretus, STS/A
Iap3rc16 b 142bp BALB/cJ
s absent M. spretus, STS/A
Iap3rc17 b 244bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc18 b 265bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc19 b 299bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc20 b 430bp BALB/cJ
s absent M. spretus, STS/A
Iap3rc21 b 440bp BALB/cJ
s absent M. spretus, STS/A
Iap3rc22 b 445bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc23 b 510bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc24 b 550bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc25 b 600bp BALB/cJ
s absent M. spretus, STS/A
Iap3rc26 b 650bp BALB/cJ
s absent M. spretus, STS/A
Iap3rc27 b 900bp STS/A
s absent BALB/cJ, M. spretus
Iap3rc28 b 1120bp STS/A
s absent BALB/cJ, M. spretus
References
J:21511 Kaushik N, et al., Intracisternal A-type particle elements as genetic markers: detection by repeat element viral element amplified locus-PCR. Mamm Genome. 1994 Nov;5(11):688-95
J:106743 Mouse Genome Informatics and NCBI UniSTS, UniSTS load for MIT markers. Database Download. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/21/2024
MGI 6.23 		The Jackson Laboratory