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JS139, JS135 Primer Detail
Primers
  • Name
    JS139, JS135
  • Primer 1 Sequence
    GTTTACCACTTAGAACACAG
  • Primer 2 Sequence
    GACTGCTCTTCCGAAGGTCC
  • ID
    MGI:803
Genes
Iap3rb1 intracisternal A-type particle, U3 region, SINE repeat b-1
Iap3rb10 intracisternal A-type particle, U3 region, SINE repeat b-10
Iap3rb11 intracisternal A-type particle, U3 region, SINE repeat b-11
Iap3rb12 intracisternal A-type particle, U3 region, SINE repeat b-12
Iap3rb13 intracisternal A-type particle, U3 region, SINE repeat b-13
Iap3rb14 intracisternal A-type particle, U3 region, SINE repeat b-14
Iap3rb15 intracisternal A-type particle, U3 region, SINE repeat b-15
Iap3rb16 intracisternal A-type particle, U3 region, SINE repeat b-16
Iap3rb17 intracisternal A-type particle, U3 region, SINE repeat b-17
Iap3rb18 intracisternal A-type particle, U3 region, SINE repeat b-18
Iap3rb19 intracisternal A-type particle, U3 region, SINE repeat b-19
Iap3rb2 intracisternal A-type particle, U3 region, SINE repeat b-2
Iap3rb3 intracisternal A-type particle, U3 region, SINE repeat b-3
Iap3rb4 intracisternal A-type particle, U3 region, SINE repeat b-4
Iap3rb5 intracisternal A-type particle, U3 region, SINE repeat b-5
Iap3rb6 intracisternal A-type particle, U3 region, SINE repeat b-6
Iap3rb7 intracisternal A-type particle, U3 region, SINE repeat b-7
Iap3rb8 intracisternal A-type particle, U3 region, SINE repeat b-8
Iap3rb9 intracisternal A-type particle, U3 region, SINE repeat b-9
Polymorphisms
J:21511 Kaushik N, et al., Mamm Genome. 1994 Nov;5(11):688-95
Endonuclease Gene Allele Fragments Strains
Iap3rb1 b 109bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb2 b 114bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb3 b 126bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb4 b 127bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb5 b 131bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb6 b 168bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rb7 b 183bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap3rb8 b 211bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb9 b 250bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap3rb10 b 127bp STS/A
s absent BALB/cJ, M. spretus
Iap3rb11 b 144bp STS/A
s absent BALB/cJ, M. spretus
Iap3rb12 b 405bp STS/A
s absent BALB/cJ, M. spretus
Iap3rb13 b 410bp BALB/cJ
s absent M. spretus, STS/A
Iap3rb14 b 414bp BALB/cJ
s absent M. spretus, STS/A
Iap3rb15 b 470bp STS/A
s absent BALB/cJ, M. spretus
Iap3rb16 b 473bp BALB/cJ
s absent M. spretus, STS/A
Iap3rb17 b 495bp STS/A
s absent BALB/cJ, M. spretus
Iap3rb18 b 800bp BALB/cJ
s absent M. spretus, STS/A
Iap3rb19 b 950bp BALB/cJ
s absent M. spretus, STS/A
References
J:21511 Kaushik N, et al., Intracisternal A-type particle elements as genetic markers: detection by repeat element viral element amplified locus-PCR. Mamm Genome. 1994 Nov;5(11):688-95
J:106743 Mouse Genome Informatics and NCBI UniSTS, UniSTS load for MIT markers. Database Download. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/21/2024
MGI 6.23 		The Jackson Laboratory