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JS-5 Probe Detail
Nucleotide
Probe/Clone
  • Name
    JS-5
  • Sequence Type
    oligo
  • ID
    MGI:17101
  • Region Covered
    Synthesized to distinguish endogenous polytropic proviruses from xenotropic proviruses. Primarily hybridizes to 3' proviral-cellular DNA junction fragments.
Source
  • Species
    Not Specified
Genes
Pmv1 polytropic murine leukemia virus 1
Pmv11 polytropic murine leukemia virus 11
Pmv12 polytropic murine leukemia virus 12
Pmv14 polytropic murine leukemia virus 14
Pmv15 polytropic murine leukemia virus 15
Pmv16 polytropic murine leukemia virus 16
Pmv17 polytropic murine leukemia virus 17
Pmv18 polytropic murine leukemia virus 18
Pmv19 polytropic murine leukemia virus 19
Pmv2 polytropic murine leukemia virus 2
Pmv21 polytropic murine leukemia virus 21
Pmv22 polytropic murine leukemia virus 22
Pmv23 polytropic murine leukemia virus 23
Pmv24 polytropic murine leukemia virus 24
Pmv25 polytropic murine leukemia virus 25
Pmv26 polytropic murine leukemia virus 26
Pmv27 polytropic murine leukemia virus 27
Pmv28 polytropic murine leukemia virus 28
Pmv29 polytropic murine leukemia virus 29
Pmv3 polytropic murine leukemia virus 3
Pmv30 polytropic murine leukemia virus 30
Pmv31 polytropic murine leukemia virus 31
Pmv32 polytropic murine leukemia virus 32
Pmv33 polytropic murine leukemia virus 33
Pmv34 polytropic murine leukemia virus 34
Pmv35 polytropic murine leukemia virus 35
Pmv36 polytropic murine leukemia virus 36
Pmv37 polytropic murine leukemia virus 37
Pmv38 polytropic murine leukemia virus 38
Pmv39 polytropic murine leukemia virus 39
Pmv4 polytropic murine leukemia virus 4
Pmv40 polytropic murine leukemia virus 40
Pmv41 polytropic murine leukemia virus 41
Pmv42 polytropic murine leukemia virus 42
Pmv44 polytropic murine leukemia virus 44
Pmv45 polytropic murine leukemia virus 45
Pmv46 polytropic murine leukemia virus 46
Pmv47 polytropic murine leukemia virus 47
Pmv5 polytropic murine leukemia virus 5
Pmv56 polytropic murine leukemia virus 56
Pmv6 polytropic murine leukemia virus 6
Pmv68 polytropic murine leukemia virus 68
Pmv7 polytropic murine leukemia virus 7
Pmv9 polytropic murine leukemia virus 9
Polymorphisms
J:9925 Frankel WN, et al., J Virol. 1989 Sep;63(9):3810-21
Endonuclease Gene Allele Fragments Strains
EcoRI Pmv1 a 3.3kb A/J, BALB/cBy, C3H/HeJ, C57BL/6J, C57L/J, DBA/2J
b absent AKR/J
EcoRI Pmv2 a 14.0kb C57BL/6J, C57L/J, DBA/2J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ
EcoRI Pmv3 a 4.1kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
EcoRI Pmv4 a 20.0kb C3H/HeJ, C57BL/6J, DBA/2J
b absent A/J, AKR/J, BALB/cBy, C57L/J
EcoRI Pmv5 a 2.8kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
EcoRI Pmv6 a 3.0kb AKR/J, C57BL/6J, DBA/2J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J
EcoRI Pmv7 a 2.15kb BALB/cBy, C57BL/6J, C57L/J
b absent A/J, AKR/J, C3H/HeJ, DBA/2J
EcoRI Pmv9 a 2.85kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
EcoRI Pmv11 a 5.0kb BALB/cBy, C57BL/6J, C57L/J
b absent A/J, AKR/J, C3H/HeJ, DBA/2J
EcoRI Pmv12 a 3.9kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
EcoRI Pmv14 a 6.5kb AKR/J, BALB/cBy, C3H/HeJ, C57BL/6J
b absent A/J, C57L/J, DBA/2J
EcoRI Pmv15 a 12.0kb C3H/HeJ, C57BL/6J
b absent A/J, BALB/cBy, C57L/J, DBA/2J
EcoRI Pmv16 a 6.0kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
EcoRI Pmv17 a 3.1kb AKR/J, C57BL/6J, C57L/J, DBA/2J
b absent A/J, BALB/cBy, C3H/HeJ
EcoRI Pmv18 a 22.0kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
EcoRI Pmv19 a 2.1kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
EcoRI Pmv21 a 21.0kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
EcoRI Pmv22 a 7.1kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
EcoRI Pmv23 a 5.2kb C57BL/6J, DBA/2J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, C57L/J
EcoRI Pmv24 a 16.0kb BALB/cBy, C3H/HeJ, C57BL/6J
b absent A/J, C57L/J, DBA/2J
EcoRI Pmv25 a 6.4kb AKR/J, C3H/HeJ
b absent C57BL/6J, C57L/J, DBA/2J
EcoRI Pmv26 a 3.7kb AKR/J, DBA/2J
b absent C57BL/6J, C57L/J
EcoRI Pmv27 a 8.0kb AKR/J, BALB/cBy
b absent C57BL/6J, C57L/J, DBA/2J
EcoRI Pmv28 a 2.65kb AKR/J
b absent C57L/J, DBA/2J
EcoRI Pmv29 a 3.65kb A/J, AKR/J, BALB/cBy
b absent C57BL/6J, C57L/J, DBA/2J
EcoRI Pmv30 a 17.0kb A/J, AKR/J, C3H/HeJ, C57L/J, DBA/2J
b absent C57BL/6J
EcoRI Pmv31 a 18.0kb A/J, AKR/J, BALB/cBy, PL/J, SJL/J, SWR/J
b absent C57BL/6J, C57L/J, DBA/2J
EcoRI Pmv32 a 6.6kb A/J, AKR/J
b absent C57BL/6J, C57L/J, DBA/2J
EcoRI Pmv33 a 4.0kb A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
b absent C57BL/6J, C57L/J
EcoRI Pmv34 a 3.2kb AKR/J
b absent C57L/J, DBA/2J
EcoRI Pmv35 a 19.0kb A/J, BALB/cBy, C3H/HeJ, DBA/2J
b absent AKR/J, C57BL/6J
EcoRI Pmv36 a 25.0kb A/J, C3H/HeJ
b absent C57BL/6J
EcoRI Pmv37 a 2.5kb A/J, BALB/cBy, C3H/HeJ
b absent C57BL/6J
EcoRI Pmv38 a 3.35kb DBA/2J
b absent AKR/J, C57BL/6J
EcoRI Pmv39 a 4.5kb DBA/2J
b absent AKR/J, C57BL/6J
EcoRI Pmv40 a 4.55kb DBA/2J
b absent AKR/J, C57BL/6J
EcoRI Pmv41 a 16.5kb DBA/2J
b absent AKR/J, C57BL/6J
EcoRI Pmv42 a 11.0kb DBA/2J
b absent AKR/J, C57BL/6J
EcoRI Pmv44 a 4.05kb C57L/J
b absent AKR/J, C57BL/6J
EcoRI Pmv45 a 17.5kb A/J, BALB/cBy
b absent C57BL/6J
EcoRI Pmv46 a 4.9kb A/J
b absent C57BL/6J
EcoRI Pmv47 a 3.05kb A/J
b absent C57BL/6J
EcoRI Pmv56 a 10.5kb A/J
b absent C57BL/6J
PvuII Pmv1 a 16.0kb A/J, BALB/cBy, C3H/HeJ, C57BL/6J, C57L/J, DBA/2J
b absent AKR/J
PvuII Pmv2 a 9.0kb C57BL/6J, C57L/J, DBA/2J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ
PvuII Pmv3 a 8.5kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
PvuII Pmv4 a 7.0kb C3H/HeJ, C57BL/6J, DBA/2J
b absent A/J, AKR/J, BALB/cBy, C57L/J
PvuII Pmv5 a 6.5kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
PvuII Pmv6 a 6.51kb AKR/J, C57BL/6J, DBA/2J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J
PvuII Pmv7 a 4.7kb BALB/cBy, C57BL/6J, C57L/J
b absent A/J, AKR/J, C3H/HeJ, DBA/2J
PvuII Pmv9 a 4.4kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
PvuII Pmv11 a 4.2kb BALB/cBy, C57BL/6J, C57L/J
b absent A/J, AKR/J, C3H/HeJ
PvuII Pmv12 a 3.8kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
PvuII Pmv14 a 2.7kb AKR/J, BALB/cBy, C3H/HeJ, C57BL/6J
b absent A/J, C57L/J, DBA/2J
PvuII Pmv15 a 2.6kb C3H/HeJ, C57BL/6J
b absent A/J, BALB/cBy, C57L/J, DBA/2J
PvuII Pmv16 a 2.55kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
PvuII Pmv17 a 2.5kb AKR/J, C57BL/6J, C57L/J, DBA/2J
b absent A/J, BALB/cBy, C3H/HeJ
PvuII Pmv18 a 2.49kb C57BL/6J
b absent A/J, BALB/cBy, C3H/HeJ, C57L/J, DBA/2J
PvuII Pmv19 a 2.4kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
PvuII Pmv21 a 2.2kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
PvuII Pmv22 a 2.15kb C57BL/6J, C57L/J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
PvuII Pmv23 a 2.1kb C57BL/6J, DBA/2J
b absent A/J, AKR/J, BALB/cBy, C3H/HeJ, C57L/J
PvuII Pmv24 a 2.0kb BALB/cBy, C3H/HeJ, C57BL/6J
b absent A/J, C57L/J, DBA/2J
PvuII Pmv25 a 15.0kb AKR/J, C3H/HeJ
b absent C57BL/6J, C57L/J, DBA/2J
PvuII Pmv26 a 5.0kb AKR/J, DBA/2J
b absent C57BL/6J, C57L/J
PvuII Pmv27 a 4.65kb AKR/J, BALB/cBy
b absent C57BL/6J, C57L/J, DBA/2J
PvuII Pmv28 a 4.42kb AKR/J
b absent C57L/J, DBA/2J
PvuII Pmv29 a 4.1kb A/J, AKR/J, BALB/cBy
b absent C57BL/6J, C57L/J, DBA/2J
PvuII Pmv30 a 3.3kb A/J, AKR/J, C3H/HeJ, C57L/J, DBA/2J
b absent C57BL/6J
PvuII Pmv31 a 3.0kb A/J, AKR/J, BALB/cBy, PL/J, SJL/J, SWR/J
b absent C57BL/6J, C57L/J, DBA/2J
PvuII Pmv32 a 2.62kb A/J, AKR/J
b absent C57BL/6J, C57L/J, DBA/2J
PvuII Pmv33 a 2.35kb A/J, AKR/J, BALB/cBy, C3H/HeJ, DBA/2J
b absent C57BL/6J, C57L/J
PvuII Pmv34 a 4.35kb AKR/J
b absent C57L/J, DBA/2J
PvuII Pmv35 a 4.8kb A/J, BALB/cBy, C3H/HeJ, DBA/2J
b absent AKR/J, C57BL/6J
PvuII Pmv36 a 4.5kb A/J, C3H/HeJ
b absent C57BL/6J
PvuII Pmv37 a 4.0kb A/J, BALB/cBy, C3H/HeJ
b absent C57BL/6J
PvuII Pmv38 a 4.55kb DBA/2J
b absent AKR/J, C57BL/6J
PvuII Pmv39 a 4.05kb DBA/2J
b absent AKR/J, C57BL/6J
PvuII Pmv40 a 3.7kb DBA/2J
b absent AKR/J, C57BL/6J
PvuII Pmv41 a 2.9kb DBA/2J
b absent AKR/J, C57BL/6J
PvuII Pmv42 a 2.61kb DBA/2J
b absent AKR/J, C57BL/6J
PvuII Pmv44 a 3.25kb C57L/J
b absent AKR/J, C57BL/6J
PvuII Pmv45 a 3.2kb A/J, BALB/cBy
b absent C57BL/6J
PvuII Pmv46 a 3.15kb A/J
b absent C57BL/6J
PvuII Pmv47 a 3.05kb A/J
b absent C57BL/6J
PvuII Pmv56 a 2.63kb A/J
b absent C57BL/6J
J:11381 Rise ML, et al., Science. 1991 Aug 9;253(5020):669-73
Endonuclease Gene Allele Fragments Strains
EcoRI Pmv68 a absent ABP/LeJ, DBA/2J
b 2.11kb EL
PvuII Pmv68 a absent ABP/LeJ, DBA/2J
b 9.2kb EL
J:3551 Johnson KR, et al., Genomics. 1992 Dec;14(4):1107-9
Endonuclease Gene Allele Fragments Strains
PvuII Pmv4 b present C57BL/6J
s absent SPRET/EiJ
References
J:9925 Frankel WN, et al., Genetic identification of endogenous polytropic proviruses by using recombinant inbred mice. J Virol. 1989 Sep;63(9):3810-21
J:11381 Rise ML, et al., Genes for epilepsy mapped in the mouse. Science. 1991 Aug 9;253(5020):669-73
J:1224 Messer A, et al., Mapping of the motor neuron degeneration (Mnd) gene, a mouse model of amyotrophic lateral sclerosis (ALS). Genomics. 1992 Jul;13(3):797-802
J:3226 Johnson KR, et al., Genetic mapping of the murine gene and 14 related sequences encoding chromosomal protein HMG-14. Mamm Genome. 1992;3(11):625-32
J:3551 Johnson KR, et al., Genetic mapping of a new homeobox gene to mouse chromosome 7. Genomics. 1992 Dec;14(4):1107-9
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory