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JS6+JS10 Probe Detail
Nucleotide
Probe/Clone
  • Name
    JS6+JS10
  • Sequence Type
    oligo
  • ID
    MGI:10332
  • Region Covered
    these oligonucleotides hybridize to xenotropic env gene sequence
  • Note
    JS6 and JS10 are 28-mer oligonucleotides that can be mixed together in an equimolar ratio to detect Xmv loci.
  • Synonyms
    JS6, JS10, JS 6-10
Source
  • Species
    virus
Genes
Bxv1 B10 xenotropic virus 1
Xmv10 xenotropic murine leukemia virus 10
Xmv11 xenotropic murine leukemia virus 11
Xmv12 xenotropic murine leukemia virus 12
Xmv13 xenotropic murine leukemia virus 13
Xmv14 xenotropic murine leukemia virus 14
Xmv15 xenotropic murine leukemia virus 15
Xmv16 xenotropic murine leukemia virus 16
Xmv17 xenotropic murine leukemia virus 17
Xmv18 xenotropic murine leukemia virus 18
Xmv19 xenotropic murine leukemia virus 19
Xmv20 xenotropic murine leukemia virus 20
Xmv21 xenotropic murine leukemia virus 21
Xmv22 xenotropic murine leukemia virus 22
Xmv23 xenotropic murine leukemia virus 23
Xmv24 xenotropic murine leukemia virus 24
Xmv25 xenotropic murine leukemia virus 25
Xmv26 xenotropic murine leukemia virus 26
Xmv27 xenotropic murine leukemia virus 27
Xmv28 xenotropic murine leukemia virus 28
Xmv29 xenotropic murine leukemia virus 29
Xmv30 xenotropic murine leukemia virus 30
Xmv31 xenotropic murine leukemia virus 31
Xmv32 xenotropic murine leukemia virus 32
Xmv33 xenotropic murine leukemia virus 33
Xmv34 xenotropic murine leukemia virus 34
Xmv35 xenotropic murine leukemia virus 35
Xmv36 xenotropic murine leukemia virus 36
Xmv37 xenotropic murine leukemia virus 37
Xmv38 xenotropic murine leukemia virus 38
Xmv39 xenotropic murine leukemia virus 39
Xmv40 xenotropic murine leukemia virus 40
Xmv41 xenotropic murine leukemia virus 41
Xmv42 xenotropic murine leukemia virus 42
Xmv44 xenotropic murine leukemia virus 44
Xmv45 xenotropic murine leukemia virus 45
Xmv48 xenotropic murine leukemia virus 48
Xmv60 xenotropic murine leukemia virus 60
Xmv61 xenotropic murine leukemia virus 61
Xmv62 xenotropic murine leukemia virus 62
Xmv63 xenotropic murine leukemia virus 63
Xmv64 xenotropic murine leukemia virus 64
Xmv7 xenotropic murine leukemia virus 7
Xmv8 xenotropic murine leukemia virus 8
Xmv9 xenotropic murine leukemia virus 9
Polymorphisms
J:9678 Frankel WN, et al., J Virol. 1989 Apr;63(4):1763-74
Endonuclease Gene Allele Fragments Strains
EcoRI Bxv1 a absent A/J, C3H/HeJ
b 6.7kb AKR/J, BALB/cJ, C57BL/6J, C57L/J, DBA/2J
EcoRI Xmv7 a absent M. m. domesticus
b 4.6kb A/J, BALB/cJ, C57BL/6J, C57L/J
EcoRI Xmv8 a absent C3H/HeJ, DBA/2J
b 4.4kb A/J, BALB/cJ, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
EcoRI Xmv9 a absent C3H/HeJ, DBA/2J
b 3.9kb A/J, BALB/c, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
EcoRI Xmv10 a absent BALB/cJ, C3H/HeJ, PL/J, SJL/J, SM/J, ST/bJ, SWR/J
b 3.8kb A/J, AKR/J, C57BL/6J, C57L/J, DBA/2J
EcoRI Xmv11 a absent M. m. domesticus
b 3.5kb A/J, BALB/cJ, C57BL/6J, C57L/J
EcoRI Xmv12 a absent A/J, AKR/J, BALB/cJ
b 3.15kb C3H/HeJ, C57BL/6J, C57L/J, DBA/2J
EcoRI Xmv13 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 3.0kb C57BL/6J, C57L/J
EcoRI Xmv14 a absent C3H/HeJ, DBA/2J
b 2.55kb A/J, BALB/c, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
EcoRI Xmv15 a absent A/J, C3H/HeJ, C57L/J, DBA/2J
b 2.35kb AKR/J, BALB/c, C57BL/6J
EcoRI Xmv16 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 2.3kb C57BL/6J, C57L/J
EcoRI Xmv17 a absent AKR/J, BALB/cJ, DBA/2J
b 2.25kb A/J, C3H/HeJ, C57BL/6J, C57L/J
EcoRI Xmv18 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 2.15kb C57BL/6J, C57L/J
EcoRI Xmv19 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 2.1kb C57BL/6J, C57L/J
EcoRI Xmv20 a absent C57L/J, DBA/2J
b 8.7kb AKR/J
EcoRI Xmv21 a absent C57L/J, DBA/2J
b 8.5kb AKR/J
EcoRI Xmv22 a absent C57L/J, DBA/2J
b 4.4kb AKR/J
EcoRI Xmv23 a absent C57L/J, DBA/2J
b 3.85kb AKR/J
EcoRI Xmv24 a absent C57BL/6J, C57L/J
b 3.7kb AKR/J, C3H/HeJ, DBA/2J
EcoRI Xmv25 a absent C57L/J, DBA/2J
b 3.05kb AKR/J
EcoRI Xmv26 a absent C57BL/6J, C57L/J, DBA/2J
b 2.05kb AKR/J, BALB/c
EcoRI Xmv27 a absent DBA/2J
b 1.9kb AKR/J, C57L/J
EcoRI Xmv28 a absent C57BL/6J, C57L/J
b 7.1kb C3H/HeJ, PL/J, SJL/J, SWR/J
EcoRI Xmv29 a absent AKR/J, C57BL/6J
b 4.8kb C3H/HeJ, DBA/2J
EcoRI Xmv30 a absent AKR/J, C57BL/6J
b 8.7kb DBA/2J
EcoRI Xmv31 a absent AKR/J, C57BL/6J
b 8.0kb A/J, BALB/cJ, DBA/2J
EcoRI Xmv32 a absent AKR/J, C57BL/6J
b 4.35kb DBA/2J
EcoRI Xmv33 a absent AKR/J, C57BL/6J
b 4.0kb DBA/2J
EcoRI Xmv34 a absent AKR/J, C57BL/6J
b 3.2kb DBA/2J
EcoRI Xmv35 a absent AKR/J
b 7.5kb C57L/J
EcoRI Xmv36 a absent AKR/J
b 4.81kb C57L/J
EcoRI Xmv37 a absent AKR/J
b 2.5kb C57L/J
EcoRI Xmv38 a absent AKR/J
b 2.45kb C57L/J
EcoRI Xmv39 a absent AKR/J
b 2.4kb C57L/J
EcoRI Xmv40 a absent M. m. domesticus
b 4.5kb A/J, BALB/cJ, C3H/HeJ, C57BL/6J, DBA/2J
EcoRI Xmv41 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 24.0kb C57BL/6J, C57L/J
EcoRI Xmv42 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 6.9kb C57BL/6J, C57L/J
EcoRI Xmv44 a absent C3H/HeJ, DBA/2J
b 6.0kb A/J, BALB/c, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
EcoRI Xmv45 a absent AKR/J, BALB/cJ, DBA/2J
b 5.5kb A/J, C3H/HeJ, C57BL/6J, C57L/J
PvuII Bxv1 a absent A/J, C3H/HeJ
b 1.9kb AKR/J, BALB/cJ, C57BL/6J, C57L/J, DBA/2J
PvuII Xmv7 a absent M. m. domesticus
b 5.71kb A/J, BALB/cJ, C57BL/6J, C57L/J
PvuII Xmv8 a absent C3H/HeJ, DBA/2J
b 5.7,3.31,3.0kb A/J, BALB/cJ, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
PvuII Xmv9 a absent C3H/HeJ, DBA/2J
b 4.3kb A/J, BALB/c, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
PvuII Xmv10 a absent BALB/cJ, C3H/HeJ, PL/J, SJL/J, SM/J, ST/bJ, SWR/J
b 2.2kb A/J, AKR/J, C57BL/6J, C57L/J, DBA/2J
PvuII Xmv11 a absent M. m. domesticus
b 11.0kb A/J, BALB/cJ, C57BL/6J, C57L/J
PvuII Xmv12 a absent A/J, AKR/J, BALB/cJ
b 9.5kb C3H/HeJ, C57BL/6J, C57L/J, DBA/2J
PvuII Xmv13 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 3.15kb C57BL/6J, C57L/J
PvuII Xmv14 a absent C3H/HeJ, DBA/2J
b 5.7,3.31,3.0kb A/J, BALB/c, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
PvuII Xmv15 a absent A/J, C3H/HeJ, C57L/J, DBA/2J
b 4.55kb AKR/J, BALB/c, C57BL/6J
PvuII Xmv16 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 2.7kb C57BL/6J, C57L/J
PvuII Xmv17 a absent AKR/J, BALB/cJ, DBA/2J
b 4.6kb A/J, C3H/HeJ, C57BL/6J, C57L/J
PvuII Xmv18 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 6.6kb C57BL/6J, C57L/J
PvuII Xmv19 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 3.6kb C57BL/6J, C57L/J
PvuII Xmv20 a absent C57L/J, DBA/2J
b 2.25kb AKR/J
PvuII Xmv21 a absent C57L/J, DBA/2J
b 13.5kb AKR/J
PvuII Xmv22 a absent C57L/J, DBA/2J
b 1.85,2.45kb AKR/J
PvuII Xmv23 a absent C57L/J, DBA/2J
b 1.85,2.45kb AKR/J
PvuII Xmv24 a absent C57BL/6J, C57L/J
b 3.3kb AKR/J, C3H/HeJ, DBA/2J
PvuII Xmv25 a absent C57L/J, DBA/2J
b 2.6kb AKR/J
PvuII Xmv26 a absent C57BL/6J, C57L/J, DBA/2J
b 4.0kb AKR/J, BALB/c
PvuII Xmv27 a absent DBA/2J
b 4.7kb AKR/J, C57L/J
PvuII Xmv28 a absent C57BL/6J, C57L/J
b 3.7kb C3H/HeJ, PL/J, SJL/J, SWR/J
PvuII Xmv29 a absent AKR/J, C57BL/6J
b 2.26kb C3H/HeJ, DBA/2J
PvuII Xmv30 a absent AKR/J, C57BL/6J
b 7.6kb DBA/2J
PvuII Xmv31 a absent AKR/J, C57BL/6J
b 2.3kb A/J, BALB/cJ, DBA/2J
PvuII Xmv32 a absent AKR/J, C57BL/6J
b 2.55kb DBA/2J
PvuII Xmv33 a absent AKR/J, C57BL/6J
b 2.05kb DBA/2J
PvuII Xmv34 a absent AKR/J, C57BL/6J
b 2.31kb DBA/2J
PvuII Xmv35 a absent AKR/J
b 3.35kb C57L/J
PvuII Xmv36 a absent AKR/J
b 2.35kb C57L/J
PvuII Xmv37 a absent AKR/J
b 3.55kb C57L/J
PvuII Xmv38 a absent AKR/J
b 3.5kb C57L/J
PvuII Xmv39 a absent AKR/J
b 8.8kb C57L/J
PvuII Xmv40 a absent M. m. domesticus
b 7.8kb A/J, BALB/cJ, C3H/HeJ, C57BL/6J, DBA/2J
PvuII Xmv41 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 2.4kb C57BL/6J, C57L/J
PvuII Xmv42 a absent A/J, AKR/J, BALB/cJ, C3H/HeJ, DBA/2J
b 2.9kb C57BL/6J, C57L/J
PvuII Xmv44 a absent C3H/HeJ, DBA/2J
b 5.7,3.31,3.0kb A/J, BALB/c, C57BL/6J, C57L/J, FVB/N, I/Ln, RIIIS/J
PvuII Xmv45 a absent AKR/J, BALB/cJ, DBA/2J
b 3.8kb A/J, C3H/HeJ, C57BL/6J, C57L/J
J:560 Elliott RW, et al., Mamm Genome. 1991;1(2):118-22
Endonuclease Gene Allele Fragments Strains
PvuII Xmv9 b not given C57BL/6J
d not given DBA/2J
J:11381 Rise ML, et al., Science. 1991 Aug 9;253(5020):669-73
Endonuclease Gene Allele Fragments Strains
EcoRI Xmv48 a absent ABP/LeJ, DBA/2J
b 6.5kb EL
EcoRI Xmv60 a absent ABP/LeJ, DBA/2J
b 7.6kb EL
EcoRI Xmv61 a absent ABP/LeJ, DBA/2J
b 3.96kb EL
EcoRI Xmv62 a absent ABP/LeJ, DBA/2J
b 3.4kb EL
EcoRI Xmv63 a absent ABP/LeJ, DBA/2J
b 7.0kb EL
EcoRI Xmv64 a absent ABP/LeJ, DBA/2J
b 2.01kb EL
PvuII Xmv12 a present DBA/2J
b absent EL
PvuII Xmv18 a absent DBA/2J
b present EL
PvuII Xmv24 a present DBA/2J
b absent EL
PvuII Xmv30 a present DBA/2J
b absent EL
PvuII Xmv32 a present DBA/2J
b absent EL
PvuII Xmv48 a absent ABP/LeJ, DBA/2J
b 1.86kb EL
PvuII Xmv60 a absent ABP/LeJ, DBA/2J
b 2.65kb EL
PvuII Xmv61 a absent ABP/LeJ, DBA/2J
b 5.6kb EL
PvuII Xmv62 a absent ABP/LeJ, DBA/2J
b 2.4kb EL
PvuII Xmv63 a absent ABP/LeJ, DBA/2J
b 3.56kb EL
PvuII Xmv64 a absent ABP/LeJ, DBA/2J
b 3.85kb EL
J:2290 Johnson KR, et al., Genomics. 1992 Mar;12(3):503-9
Endonuclease Gene Allele Fragments Strains
PvuII Xmv42 b 2.9kb C57BL/6J
s absent SPRET/EiJ
References
J:9678 Frankel WN, et al., Genetic analysis of endogenous xenotropic murine leukemia viruses: association with two common mouse mutations and the viral restriction locus Fv-1. J Virol. 1989 Apr;63(4):1763-74
J:560 Elliott RW, et al., DNA variants with telomere probe enable genetic mapping of ends of mouse chromosomes. Mamm Genome. 1991;1(2):118-22
J:11381 Rise ML, et al., Genes for epilepsy mapped in the mouse. Science. 1991 Aug 9;253(5020):669-73
J:2290 Johnson KR, et al., Chromosomal localization of the murine gene and two related sequences encoding high-mobility-group I and Y proteins. Genomics. 1992 Mar;12(3):503-9
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05/21/2024
MGI 6.23 		The Jackson Laboratory