Rr311 Other Genome Feature Detail

Summary

• Symbol
  Rr311
• Name
  regulatory region 311
• Synonyms
  EACBE

• Feature Type
  CTCF binding site
• IDs
  MGI:7378533
• Regulates expression of
  Tcra (1 regulated gene)

Location &
Maps

• Sequence Map
  Chr14:54465538-54465774 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI
• chr14:54465538-54465774 (GRCm39)

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available

References

• Summaries
  All 2

  Phenotypes 2
• Earliest
  J:296383 Zhao H, et al., A role of the CTCF binding site at enhancer Ealpha in the dynamic chromatin organization of the Tcra-Tcrd locus. Nucleic Acids Res. 2020 Sep 25;48(17):9621-9636
• Latest
  J:340808 Dai R, et al., Three-way contact analysis characterizes the higher order organization of the Tcra locus. Nucleic Acids Res. 2023 Sep 22;51(17):8987-9000

Rr311 regulates expression of:

Feature	Feature Type	Location	Reference
Tcra, T cell receptor alpha chain	complex/cluster/region	Chr14:52665424-54461655 (+)	J:296383