Rr201 Other Genome Feature Detail

Summary

• Symbol
  Rr201
• Name
  regulatory region 201
• Synonyms
  PE Lhx5(-109kb)

• Feature Type
  enhancer
• IDs
  MGI:7286312
• Regulates expression of
  Lhx5 (1 regulated gene)

Location &
Maps

• Sequence Map
  Chr5:120459966-120460991 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI
• J:307826: located 109 kb upstream of Lhx5. Two sets of coordinates listed: chr5:120321822-120323064 (GRCm38); chr5:120459887-120461129 (GRCm39) and chr5:120321901-120322926 (GRCm38); chr5:120459966-120460991 (GRCm39). Coordinates for gRNAs: left: chr5:120460332-120460351 (GRCm39); chr5:120322267-120322286 (GRCm38) right: chr5:120460896-120460915 (GRCm39); chr5:120322267-120322286 (GRCm38) Used chr5:120459966-120460991 (GRCm39) for location.

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available

References

• Summaries
  All 1

  Phenotypes 1
• Earliest
  J:307826 Crispatzu G, et al., The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo. Nat Commun. 2021 Jul 16;12(1):4344

Rr201 regulates expression of:

Feature	Feature Type	Location	Reference
Lhx5, LIM homeobox protein 5	protein coding gene	Chr5:120569764-120579288 (+)	J:307826