Rr80450 Other Genome Feature Detail

Summary

• Symbol
  Rr80450
• Name
  regulatory region 80450
• Synonyms
  ENSMUSR00000643506, mSRR102

• Feature Type
  enhancer
• IDs
  MGI:6968672
• Member of
  Rr549 cluster
• Regulates expression of
  Sox2 (1 regulated gene)

Location &
Maps

• Sequence Map
  Chr3:34807601-34808400 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI
• J:342012 suppl. table S8 coordinates: chr3:34753100-34754600 (GRCm38) chr3:34807249-34808749 (GRCm39)

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142

References

• Summaries
  All 2
• Earliest
  J:342012 Abatti LE, et al., Epigenetic reprogramming of a distal developmental enhancer cluster drives SOX2 overexpression in breast and lung adenocarcinoma. Nucleic Acids Res. 2023 Oct 27;51(19):10109-10131

Rr80450 regulates expression of:

Feature	Feature Type	Location	Reference
Sox2, SRY (sex determining region Y)-box 2	protein coding gene	Chr3:34704554-34706610 (+)	J:353669