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Cpgi5563 Other Genome Feature Detail
Summary
  • Symbol
    Cpgi5563
  • Name
    CpG island 5563
  • Synonyms
    CGI5563
  • Feature Type
    CpG island
  • IDs
    MGI:5670665
Location &
Maps
more
  • Sequence Map
    Chr13:48698873-48700447 bp
    From MGI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    1 phenotype reference
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozgyous for a null allele exhibit postnatal lethality, increased body weight, decreased triglyceride, cholesterol and amylase levels, increased bone mineral content, and decreased T cell subtypes.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    21
  • Tissues
    12
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    Sequences &
    Gene Models
    less
    • All Sequences
      1
    Representative SequencesLengthStrain/SpeciesFlank
    transcript KY467470 GenBank | ENA | DDBJ | MGI Sequence Detail 6634 ZRU/MplStud  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 3
      Primer pair 3
    References
    more
    • Summaries
      All 3
      Developmental Gene Expression 1
      Phenotypes 1
    • Earliest
      J:216922 Illingworth RS, et al., Orphan CpG islands identify numerous conserved promoters in the mammalian genome. PLoS Genet. 2010 Sep;6(9):e1001134
    • Latest
      J:277622 Koerner MV, et al., An Orphan CpG Island Drives Expression of a let-7 miRNA Precursor with an Important Role in Mouse Development. Epigenomes. 2019 Mar;3(1):7
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    04/23/2024
    MGI 6.23     		The Jackson Laboratory