Gm10801 Gene Detail

Summary

• Symbol
  Gm10801
• Name
  predicted gene 10801

• Feature Type
  protein coding gene
• IDs
  MGI:3641656
• Alliance
  gene page
• Transcription Start Sites
  22 TSS

Location &
Maps

• Sequence Map
  Chr2:98492582-98494428 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 53.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641656	protein coding gene	Chr2:98492582-98494428 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10801
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm10801
• Find Mice (IMSR)
  24 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000075015 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075015	Ensembl Gene Model | MGI Sequence Detail	1847	C57BL/6J
polypeptide	F7C7Q0	UniProt | EBI | MGI Sequence Detail	168	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm10801:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19028	Chr2:98492572-98492588 (+)	-2 bp
Tssr19029	Chr2:98492594-98492614 (+)	22 bp
Tssr19030	Chr2:98492667-98492690 (+)	97 bp
Tssr19031	Chr2:98492786-98492807 (+)	215 bp
Tssr19032	Chr2:98492811-98492821 (+)	234 bp
Tssr19033	Chr2:98492845-98492855 (+)	268 bp
Tssr19034	Chr2:98492918-98492949 (+)	352 bp
Tssr19035	Chr2:98493019-98493045 (+)	450 bp
Tssr19036	Chr2:98493084-98493099 (+)	510 bp
Tssr19037	Chr2:98493101-98493123 (+)	530 bp
Tssr19038	Chr2:98493177-98493205 (+)	609 bp
Tssr19039	Chr2:98493235-98493244 (+)	658 bp
Tssr19040	Chr2:98493286-98493306 (+)	714 bp
Tssr19041	Chr2:98494058-98494064 (+)	1,479 bp
Tssr19042	Chr2:98494065-98494085 (+)	1,493 bp
Tssr574	Chr2:98494100-98494103 (+)	1,520 bp
Tssr19043	Chr2:98494104-98494114 (+)	1,527 bp
Tssr19044	Chr2:98494145-98494150 (+)	1,566 bp
Tssr19045	Chr2:98494163-98494190 (+)	1,595 bp
Tssr19046	Chr2:98494200-98494218 (+)	1,627 bp
Tssr19047	Chr2:98494230-98494235 (+)	1,651 bp
Tssr19048	Chr2:98494360-98494393 (+)	1,795 bp