Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  13
• Reference
  J:38409 Beckers MC, et al., High-resolution linkage map of mouse chromosome 13 in the vicinity of the host resistance locus Lgn1. Genomics. 1997 Feb 1;39(3):254-63
• ID
  MGI:48064

Genes

Gene	Assay Type
D13Mit128	PCR amplified length variant
D13Mit194	PCR amplified length variant
D13Mit147	PCR amplified length variant
D13Mit36	PCR amplified length variant
D13Mit146	PCR amplified length variant
Naip5	resistance/susceptibility
D13Mit37	PCR amplified length variant
D13Mit70	PCR amplified length variant

Notes

• Reference
  Authors use Htr1 for locus symbol Htr1a.
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <a> <a> <a> <a> <a> <a> <a> <a>/<b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (A/J x C57BL/6J)F1
• Male Parent
  <a> <a> <a> <a> <a> <a> <a> <a>/<a> <a> <a> <a> <a> <a> <a> <a>
• Strain
  A/J
• Allele 1
  a from A/J
• Allele 2
  b from C57BL/6J

CROSS Data

MC #mice	D13Mit128	D13Mit194	D13Mit147	D13Mit36	D13Mit146	Naip5	D13Mit37	D13Mit70
606	a	a	a	a	a	a	a	a
600	b	b	b	b	b	b	b	b
12	a	b	b	b	b	b	b	b
8	b	a	a	a	a	a	a	a
1	b	b	a	a	a	a	a	a
7	a	a	a	b	b	b	b	b
5	b	b	b	a	a	a	a	a
7	a	a	a	a	b	b	b	b
4	b	b	b	b	a	a	a	a
1	b	b	b	b	a	.	a	a
2	b	b	b	b	b	a	a	a
5	a	a	a	a	a	a	a	b
1	a	a	a	a	a	.	a	b
11	b	b	b	b	b	b	b	a

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D13Mit128	D13Mit194	20	1270	1.575	0.349
D13Mit194	D13Mit147	1	1270	0.079	0.079
D13Mit147	D13Mit36	12	1270	0.945	0.271
D13Mit36	D13Mit146	12	1270	0.945	0.271
D13Mit146	Naip5	2	1268	0.158	0.111
Naip5	D13Mit37	0	1268	0.000	0.000
D13Mit37	D13Mit70	17	1270	1.339	0.322