Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  5
• Reference
  J:32664 Okazaki Y, et al., Direct detection and isolation of restriction landmark genomic scanning (RLGS) spot DNA markers tightly linked to a specific trait by using the RLGS spot-bombing method. Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5610-4
• ID
  MGI:46852

Genes

Gene	Assay Type	Description
D5Mit47	PCR amplified length variant	MUSMDR
Abcb1b	PCR amplified length variant	MUSMDR
D5Rik87	RLGS
D5Rik88	RLGS
D5Rik89	RLGS
D5Rik90	RLGS
D5Rik91	RLGS
D5Rik92	RLGS
D5Rik93	RLGS
D5Rik94	RLGS
D5Mit1	PCR amplified length variant
D5Rik95	RLGS
D5Rik96	RLGS
D5Mit227	PCR amplified length variant
D5Rik97	RLGS
D5Rik98	RLGS
D5Rik99	RLGS
D5Mit61	PCR amplified length variant
Reln	visible phenotype
D5Mit72	PCR amplified length variant
D5Rik100	RLGS
D5Rik101	RLGS
D5Rik102	RLGS
D5Rik103	RLGS
D5Rik104	RLGS
D5Mit180	RLGS
D5Rik105	RLGS
D5Rik106	RLGS
D5Rik107	RLGS
D5Mit73	PCR amplified length variant
D5Rik108	RLGS
D5Rik109	RLGS
D5Rik110	RLGS
D5Rik111	RLGS
D5Rik112	RLGS
D5Rik113	RLGS
D5Rik114	RLGS
D5Rik115	RLGS
D5Rik116	RLGS
D5Rik117	RLGS
Htr5a	Southern analysis	Htr5a probe2

Notes

• Reference
  Authors use 5ht5a and rl for locus symbols Htr5a and Reln respectively.

CROSS

• Type
  Backcross, female
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (BALB/cA-Reln x M. spretus)F1
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
• Strain
  BALB/cA-Reln/Reln
• Allele 1
  c from BALB/cA-Reln/Reln
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	D5Mit47	Abcb1b	D5Rik87	D5Rik88	D5Rik89	D5Rik90	D5Rik91	D5Rik92	D5Rik93	D5Rik94	D5Mit1	D5Rik95	D5Rik96	D5Mit227	D5Rik97	D5Rik98	D5Rik99	D5Mit61	Reln	D5Mit72	D5Rik100	D5Rik101	D5Rik102	D5Rik103	D5Rik104	D5Mit180	D5Rik105	D5Rik106	D5Rik107	D5Mit73	D5Rik108	D5Rik109	D5Rik110	D5Rik111	D5Rik112	D5Rik113	D5Rik114	D5Rik115	D5Rik116	D5Rik117	Htr5a
151	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
153	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
1	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
1	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
2	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
3	s	s	s	s	s	s	s	s	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
4	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
2	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
2	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
3	s	s	s	s	s	s	s	s	s	s	s	s	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
1	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
1	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
1	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
1	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
7	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c
1	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	s	s	s	s	s	s	s	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	s

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D5Mit47	Abcb1b	0	339	0.000	0.000
Abcb1b	D5Rik87	2	339	0.590	0.416
D5Rik87	D5Rik88	1	339	0.295	0.295
D5Rik88	D5Rik89	0	339	0.000	0.000
D5Rik89	D5Rik90	0	339	0.000	0.000
D5Rik90	D5Rik91	0	339	0.000	0.000
D5Rik91	D5Rik92	0	339	0.000	0.000
D5Rik92	D5Rik93	0	339	0.000	0.000
D5Rik93	D5Rik94	0	339	0.000	0.000
D5Rik94	D5Mit1	5	339	1.475	0.655
D5Mit1	D5Rik95	5	339	1.475	0.655
D5Rik95	D5Rik96	2	339	0.590	0.416
D5Rik96	D5Mit227	0	339	0.000	0.000
D5Mit227	D5Rik97	5	339	1.475	0.655
D5Rik97	D5Rik98	0	339	0.000	0.000
D5Rik98	D5Rik99	0	339	0.000	0.000
D5Rik99	D5Mit61	0	339	0.000	0.000
D5Mit61	Reln	0	339	0.000	0.000
Reln	D5Mit72	0	339	0.000	0.000
D5Mit72	D5Rik100	1	339	0.295	0.295
D5Rik100	D5Rik101	1	339	0.295	0.295
D5Rik101	D5Rik102	1	339	0.295	0.295
D5Rik102	D5Rik103	0	339	0.000	0.000
D5Rik103	D5Rik104	0	339	0.000	0.000
D5Rik104	D5Mit180	0	339	0.000	0.000
D5Mit180	D5Rik105	1	339	0.295	0.295
D5Rik105	D5Rik106	11	339	3.245	0.962
D5Rik106	D5Rik107	0	339	0.000	0.000
D5Rik107	D5Mit73	0	339	0.000	0.000
D5Mit73	D5Rik108	1	339	0.295	0.295
D5Rik108	D5Rik109	0	339	0.000	0.000
D5Rik109	D5Rik110	0	339	0.000	0.000
D5Rik110	D5Rik111	0	339	0.000	0.000
D5Rik111	D5Rik112	0	339	0.000	0.000
D5Rik112	D5Rik113	0	339	0.000	0.000
D5Rik113	D5Rik114	0	339	0.000	0.000
D5Rik114	D5Rik115	0	339	0.000	0.000
D5Rik115	D5Rik116	0	339	0.000	0.000
D5Rik116	D5Rik117	0	339	0.000	0.000
D5Rik117	Htr5a	1	339	0.295	0.295