Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  17
• Reference
  J:20144 Heine D, et al., Analysis of recombinational hot spots associated with the p haplotype of the mouse MHC. Genomics. 1994 Sep 1;23(1):168-77
• ID
  MGI:44459

Genes

Gene	Assay Type	Description
D17Aus127	PCR amplified length variant	D17Aus127-pA, D17Aus127-pB
D17Mit28	PCR amplified length variant	D545
D17Nds2	PCR amplified length variant	28.MMHSP68L
D17Nds3	PCR amplified length variant	22.MMTNFAB
D17Rua7	PCR amplified length variant	D17Rua7-pA, D17Rua7-pB
D17Mit24	PCR amplified length variant	D12

Notes

• Reference
  In this reference the authors used PCR-based markers found within anchor loci to map recombination hot spots on Chromosome 17. The markers and corresponding loci (provided in parenthesis) are: D17Mit23 (Pim1), D17Rua3 (Crya1), D17Mit28 (H2-K), D17Mit21 (H2-Ab), D17Mt22 (H2-Eb), D17Rua2 (H2-Ea), D17Mit34 (H2-S referred to in text as C4-Slp), D17Nds2 (Hsp70-1), D17Nds3 (Tnfb), D17Rua7 (H2-D), D17Rua9 (H2-Q1), D17Rua5 (H2-M4), D7Rua6 (H2-M6), D17Mit24 (H2-M2) and D17Rua1 (Tpx1).

CROSS

• Type
  Backcross, female
• Female Parent
  <p> <p> <p> <p> <p> <p>/ <k> <k> <k> <k> <k> <k>
• Strain
  (C3.NB-H2

  x B10.K-H2)F1

• Male Parent
  <k> <k> <k> <k> <k> <k>/<k> <k> <k> <k> <k> <k>
• Strain
  B10.K-H2
• Allele 1
  p from C3.NB-H2

• Allele 2
  k from B10.K-H2

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D17Aus127	D17Mit28	1	149
D17Mit28	D17Nds2	0	150
D17Nds2	D17Nds3	0	150
D17Nds3	D17Rua7	0	150
D17Rua7	D17Mit24	0	150

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D17Aus127	D17Mit28	1	150	0.667	0.664
D17Mit28	D17Nds2	0	150	0.000	0.000
D17Nds2	D17Nds3	0	150	0.000	0.000
D17Nds3	D17Rua7	0	150	0.000	0.000
D17Rua7	D17Mit24	0	150	0.000	0.000