Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  11
• Reference
  J:19832 Kuramoto T, et al., The alymphoplasia (aly) mutation co-segregates with the intercellular adhesion molecule-2 (lcam-2) on mouse chromosome 11. Int Immunol. 1994 Jul;6(7):991-4
• ID
  MGI:44362

Genes

Gene	Assay Type	Description
D11Nds9	PCR amplified length variant	T14
D11Mit15	PCR amplified length variant	D5
Ccl2	PCR amplified length variant	primer 74
D11Mit67	PCR amplified length variant	B654
D11Mit14	PCR amplified length variant	D2
Krt31c	PCR amplified length variant	Krt1-A, Krt1-B
D11Mit59	PCR amplified length variant	D620
D11Mit52	PCR amplified length variant	D517
D11Nds7	PCR amplified length variant	T12
Map3k14	visible phenotype
D11Mit10	PCR amplified length variant	M162
D11Mit13	PCR amplified length variant	DACE
D11Mit58	PCR amplified length variant	D563
Icam2	PCR amplified length variant	Icam2-A, Icam2-B
D11Mit12	PCR amplified length variant	L3

Notes

• Reference
  After sequence, Northern, and protein analyses, authors concluded Icam2 is not responsible for the aly/aly phenotype.

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m>/<a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a>
• Strain
  (MSM x ALY)F1
• Male Parent
  <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a>/<a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a> <a>
• Strain
  ALY
• Allele 1
  m from MSM/Ms
• Allele 2
  a from ALY

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D11Nds9	Map3k14	46	109
D11Mit15	Map3k14	34	121
Ccl2	Map3k14	28	127
D11Mit67	Map3k14	7	148
D11Mit14	Map3k14	5	150
Krt31c	Map3k14	5	150
D11Mit59	Map3k14	4	151
D11Mit52	Map3k14	1	154
D11Nds7	Map3k14	1	154
Map3k14	D11Mit10	0	155
Map3k14	D11Mit13	0	155
Map3k14	D11Mit58	0	155
Map3k14	Icam2	0	155
Map3k14	D11Mit12	13	142

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D11Nds9	Map3k14	46	155	29.677	3.669
D11Mit15	Map3k14	34	155	21.935	3.324
Ccl2	Map3k14	28	155	18.065	3.090
D11Mit67	Map3k14	7	155	4.516	1.668
D11Mit14	Map3k14	5	155	3.226	1.419
Krt31c	Map3k14	5	155	3.226	1.419
D11Mit59	Map3k14	4	155	2.581	1.274
D11Mit52	Map3k14	1	155	0.645	0.643
D11Nds7	Map3k14	1	155	0.645	0.643
Map3k14	D11Mit10	0	155	0.000	0.000
Map3k14	D11Mit13	0	155	0.000	0.000
Map3k14	D11Mit58	0	155	0.000	0.000
Map3k14	Icam2	0	155	0.000	0.000
Map3k14	D11Mit12	13	155	8.387	2.226