Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  1
• Reference
  J:12786 Malo D, et al., High-resolution linkage map in the vicinity of the host resistance locus Bcg. Genomics. 1993 Jun;16(3):655-63
• ID
  MGI:43541

Genes

Gene	Assay Type
D1Mcg1	PCR amplified length variant
D1Mcg163	reported elsewhere
D1Mcg2	PCR amplified length variant
D1Mcg105	Southern analysis
D1Mcg3	PCR amplified length variant
D1Mcg165	PCR amplified length variant
D1Mcg4	PCR amplified length variant
D1Mcg5	PCR amplified length variant
Vil1	reported elsewhere
Slc11a1	resistance/susceptibility
D1Mcg7	PCR amplified length variant
Des	reported elsewhere
D1Mcg8	PCR amplified length variant
Inha	reported elsewhere

Notes

• Reference
  Authors use Lsh for Nramp1, Lsh is an allele of Nramp1.
• Experiment
  Parental typings for D1Mcg2, D1Mcg3, D1Mcg4, D1Mcg5, Nramp and D1Mcg7 were inferred from typings of flanking markers D1Mcg1 and D1Mcg8.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c>/<b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (C57L/J x C57BL/6J)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Allele 1
  c from C57L/J
• Allele 2
  b from C57BL/6J

CROSS Data

MC #mice	D1Mcg1	D1Mcg2	D1Mcg3	D1Mcg4	D1Mcg5	Vil1	D1Mcg7	D1Mcg8
494	c	c	c	c	c	c	c	c
471	b	b	b	b	b	b	b	b
17	b	c	c	c	c	c	c	c
15	c	b	b	b	b	b	b	b
2	b	b	b	b	b	b	c	c
0	c	c	c	c	c	c	b	b
0	b	b	b	b	b	b	b	c
1	c	c	c	c	c	c	c	b

Additional Mice Typed Only for Specific Pairs of Loci

Marker 1	Marker 2	# Recombinants	# Parentals
D1Mcg163	D1Mcg105	32	968
D1Mcg105	D1Mcg165	0	1000
D1Mcg165	D1Mcg165	0	1000
D1Mcg165	Slc11a1	0	998
D1Mcg165	Des	2	998
Des	Inha	1	1000

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D1Mcg1	D1Mcg2	32	1000	3.200	0.557
D1Mcg2	D1Mcg3	0	1000	0.000	0.000
D1Mcg3	D1Mcg4	0	1000	0.000	0.000
D1Mcg4	D1Mcg5	0	1000	0.000	0.000
D1Mcg5	Vil1	0	1000	0.000	0.000
Vil1	D1Mcg7	2	1000	0.200	0.141
D1Mcg7	D1Mcg8	1	1000	0.100	0.100