Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  4
• Reference
  J:18269 Fleming J, et al., Linkage analysis of the whirler deafness gene on mouse chromosome 4. Genomics. 1994 May 1;21(1):42-8
• ID
  MGI:43457

Genes

Gene	Allele	Assay Type	Description
D4Mit5		PCR amplified length variant	A1
D4Mit38		PCR amplified length variant	A881
D4Mit6		PCR amplified length variant	M64
Alad		Southern analysis	ALAD cDNA
D4Mit44		PCR amplified length variant	B692
Zfp37		Southern analysis	Zfp37 cDNA
Whrn		visible phenotype
Tnc		Southern analysis	Hxb cDNA
D4Mit25		PCR amplified length variant	B169
D4Nds9		PCR amplified length variant	8.R32
D4Mit7		PCR amplified length variant	A71
D4Ler2	Tyrp1^b	Southern analysis	D4Ler2 genomic
Tyrp1		visible phenotype
D4Mit45		PCR amplified length variant	B545
D4Wsm1		PCR amplified length variant	D4Wsm1-pA, D4Wsm1-pB
D4Mit27		PCR amplified length variant	P87
D4Mit15		PCR amplified length variant	A122
D4Rck65		Southern analysis	D4Rck65 genomic

Notes

• Reference
  Authors use symbols Tzn, D4Mit27b, b, and Hxb for Zfp37, D4Mit27, Tyrp1, and Tnc respectively.
• Experiment
  Recombinant Chromosomes only are reported in the summary haplotype data.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w>
• Strain
  (M. m. castaneus x STOCK Whrn Tyrp1)F1
• Male Parent
  <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w>/<w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w> <w>
• Strain
  STOCK Whrn Tyrp1
• Allele 1
  c from M. m. castaneus
• Allele 2
  w from STOCK Whrn Tyrp1

CROSS Data

MC #mice	D4Mit5	D4Mit38	D4Mit6	Alad	D4Mit44	Whrn	Tnc	D4Mit25	D4Nds9	D4Mit7	D4Ler2	Tyrp1	D4Mit45	D4Wsm1	D4Mit27	D4Mit15
55	w	w	w	w	w	w	w	w	w	w	w	w	w	w	w	w
38	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
3	c	c	c	w	w	w	w	w	w	w	w	w	w	w	w	w
1	w	w	w	c	c	c	c	c	c	c	c	c	c	c	c	c
1	w	w	w	w	w	c	c	c	c	c	c	c	c	c	c	c
1	w	w	w	w	w	w	c	c	c	c	c	c	c	c	c	c
2	c	c	c	c	c	c	c	w	w	w	w	w	w	w	w	w
1	w	w	w	w	w	w	w	w	w	c	c	c	c	c	c	c
1	c	c	c	c	c	c	c	c	c	w	w	w	w	w	w	w
1	w	w	w	w	w	w	w	w	w	w	w	c	c	c	c	c
1	c	c	c	c	c	c	c	c	c	c	c	w	w	w	w	w
2	w	w	w	w	w	w	w	w	w	w	w	w	c	c	c	c
4	c	c	c	c	c	c	c	c	c	c	c	c	w	w	w	w
1	c	c	c	c	c	c	c	c	c	c	c	c	c	w	w	w
1	w	w	w	w	w	w	w	w	w	w	w	w	w	w	w	c
2	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	w
2	c	c	w	w	w	w	w	w	w	w	w	w	w	w	w	w
1	w	w	c	c	c	c	c	c	c	c	c	c	c	c	c	c

Additional Mice Typed Only for Specific Pairs of Loci

Marker 1	Marker 2	# Recombinants	# Parentals
D4Mit6	Zfp37	3	102
D4Mit6	Alad	4	114
D4Mit6	D4Mit44	4	114
D4Mit6	Zfp37	5	113
D4Mit6	D4Mit45	19	99
D4Mit6	D4Wsm1	19	99
D4Mit6	D4Mit27	22	96
D4Mit6	D4Mit15	10	42
Alad	Zfp37	1	117
Alad	D4Mit45	15	103
Alad	D4Wsm1	15	103
Alad	D4Mit27	18	100
Alad	D4Mit15	7	45
Zfp37	Alad	0	105
Zfp37	D4Mit44	0	105
Zfp37	Zfp37	1	104
Zfp37	D4Mit45	13	92
Zfp37	D4Mit27	16	89
Zfp37	D4Mit15	16	89
Zfp37	Zfp37	6	38
D4Mit44	D4Mit45	1	117
D4Mit44	D4Mit45	15	103
D4Mit44	D4Mit27	15	103
D4Mit44	D4Mit15	18	100
Zfp37	D4Mit45	7	45
Zfp37	D4Mit45	14	104
Zfp37	D4Mit27	14	104
Zfp37	D4Mit15	17	101
D4Mit45	D4Mit27	6	46
D4Mit45	D4Mit15	13	115
D4Mit45	D4Mit27	1	51
D4Wsm1	D4Mit15	3	115
D4Mit27	D4Mit15	1	51
D4Mit27	D4Mit15	0	52