Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  2
• Reference
  J:2948 Jenkins NA, et al., Assignment of secretogranin I locus to mouse chromosome 2 by in situ hybridization and interspecific backcross analysis. Genomics. 1991 Oct;11(2):479-80
• ID
  MGI:41998

Genes

Gene	Assay Type	Description
Il1a	reported elsewhere
Prnp	reported elsewhere
Chgb	Southern analysis	Chgb 2.3kb cDNA
Pax1	reported elsewhere
Hck	reported elsewhere

Notes

• Reference
  Authors use Scg-1 for Chgb.
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Mapping Panel
  Copeland-Jenkins
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Il1a	Prnp	Chgb	Pax1	Hck
41	b	b	b	b	b
71	s	s	s	s	s
0	s	b	b	b	b
0	b	s	s	s	s
0	s	s	b	b	b
1	b	b	s	s	s
7	s	s	s	b	b
4	b	b	b	s	s
4	s	s	s	s	b
4	b	b	b	b	s

Additional Mice Typed Only for Specific Pairs of Loci

Marker 1	Marker 2	# Recombinants	# Parentals
Il1a	Prnp	0	10
Chgb	Pax1	2	51
Pax1	Hck	2	31

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Il1a	Prnp	0	142	0.000	0.000
Prnp	Chgb	1	132	0.758	0.755
Chgb	Pax1	13	185	7.027	1.879
Pax1	Hck	10	165	6.061	1.858