Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  19
• Reference
  J:49133 Hallonet M, et al., Vax1 is a novel homeobox-containing gene expressed in the developing anterior ventral forebrain. Development. 1998 Jul;125(14):2599-610
• ID
  MGI:1278414

Genes

Gene	Assay Type	Description
Pax2	Southern analysis	Pax2 cDNA6
Fgf8	Southern analysis	Fgf8 cDNA7
Mxi1	reported elsewhere
Emx2	Southern analysis	Emx2 genomic 1
Vax1	Southern analysis	Vax1 cDNA2
Prdx3	reported elsewhere

Notes

• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Mapping Panel
  Copeland-Jenkins
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Pax2	Fgf8	Mxi1	Emx2	Vax1	Prdx3
51	b	b	b	b	b	b
47	s	s	s	s	s	s
0	s	b	b	b	b	b
1	b	s	s	s	s	s
2	s	s	b	b	b	b
5	b	b	s	s	s	s
2	s	s	s	b	b	b
5	b	b	b	s	s	s
0	s	s	s	s	b	b
0	b	b	b	b	s	s
0	s	s	s	s	s	b
0	b	b	b	b	b	s

Additional Mice Typed Only for Specific Pairs of Loci

Marker 1	Marker 2	# Recombinants	# Parentals
Pax2	Fgf8	1	40
Fgf8	Mxi1	1	45
Mxi1	Emx2	4	52
Emx2	Vax1	0	44
Vax1	Prdx3	1	42

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Pax2	Fgf8	2	154	1.299	0.912
Fgf8	Mxi1	8	159	5.031	1.734
Mxi1	Emx2	11	169	6.509	1.898
Emx2	Vax1	0	157	0.000	0.000
Vax1	Prdx3	1	156	0.641	0.639