Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  6
• Reference
  J:47939 McKee-Johnson JW, et al., Physical and genetic maps of the deafwaddler region on distal mouse Chr 6. Genomics. 1998 May 1;49(3):371-7
• ID
  MGI:1270116

Genes

Gene	Assay Type	Description
D6Mit64	PCR amplified length variant
Cntn3	PCR amplified length variant	Pang-pA, Pang-pB
Itpr1	PCR amplified length variant	Itpr1-pA, Itpr1-pB
D6Mit108	PCR amplified length variant
D6Mit54	PCR amplified length variant
D6Mit23	PCR amplified length variant
D6Mit107	PCR amplified length variant
D6Mit328	PCR amplified length variant
D6Mit11	PCR amplified length variant
Atp2b2	visible phenotype
D6Mit55	PCR amplified length variant
Slc6a11	Southern analysis	GAT-B
D6Mit63	PCR amplified length variant
Syn2	PCR amplified length variant	Syn2-pA, Syn2-pB
D6Mit44	PCR amplified length variant

CROSS

• Type
  Backcross, female
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> /<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (CAST/Ei x C3HeB/FeJ-Atp2b2)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C3HeB/FeJ
• Allele 1
  c from CAST/EiJ
• Allele 2
  b from C3HeB/FeJ

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D6Mit64	Itpr1	10	481
Cntn3	Itpr1	10	481
Itpr1	D6Mit108	4	487
D6Mit108	D6Mit54	5	486
D6Mit54	D6Mit23	2	489
D6Mit54	D6Mit107	2	489
D6Mit54	D6Mit328	2	489
D6Mit23	D6Mit11	4	487
D6Mit107	D6Mit11	4	487
D6Mit328	D6Mit11	4	487
D6Mit11	Atp2b2	1	490
Atp2b2	D6Mit55	4	487
Atp2b2	Slc6a11	4	487
D6Mit55	D6Mit63	1	490
Slc6a11	D6Mit63	1	490
D6Mit63	Syn2	2	489
D6Mit63	D6Mit44	2	489

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D6Mit64	Itpr1	10	491	2.037	0.637
Cntn3	Itpr1	10	491	2.037	0.637
Itpr1	D6Mit108	4	491	0.815	0.406
D6Mit108	D6Mit54	5	491	1.018	0.453
D6Mit54	D6Mit23	2	491	0.407	0.287
D6Mit54	D6Mit107	2	491	0.407	0.287
D6Mit54	D6Mit328	2	491	0.407	0.287
D6Mit23	D6Mit11	4	491	0.815	0.406
D6Mit107	D6Mit11	4	491	0.815	0.406
D6Mit328	D6Mit11	4	491	0.815	0.406
D6Mit11	Atp2b2	1	491	0.204	0.203
Atp2b2	D6Mit55	4	491	0.815	0.406
Atp2b2	Slc6a11	4	491	0.815	0.406
D6Mit55	D6Mit63	1	491	0.204	0.203
Slc6a11	D6Mit63	1	491	0.204	0.203
D6Mit63	Syn2	2	491	0.407	0.287
D6Mit63	D6Mit44	2	491	0.407	0.287