Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  13
• Reference
  J:42685 Sagai T, et al., rim2 (recombination induced mutation 2) is a new allele of pearl and a mouse model of human Hermansky-Pudlak Syndrome (HPS): genetic and physical mapping. Mamm Genome. 1997;9(1):2-7
• ID
  MGI:1201493

Genes

Gene	Allele	Assay Type
D13Mit27		PCR amplified length variant
D13Mit192		PCR amplified length variant
D13Mit159		PCR amplified length variant
D13Mit106		PCR amplified length variant
D13Mit29		PCR amplified length variant
D13Mit28		PCR amplified length variant
D13Mit108		PCR amplified length variant
Ap3b1	Ap3b1^pe-rim2	visible phenotype
D13Mit160		PCR amplified length variant
D13Mit169		PCR amplified length variant
D13Mit258		PCR amplified length variant
D13Mit144		PCR amplified length variant
D13Mit128		PCR amplified length variant
D13Mit147		PCR amplified length variant
D13Mit36		PCR amplified length variant

Notes

• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m>
• Strain
  (C57BL/10Slc-Ap3b1 x MSM)F1
• Male Parent
  <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m>/<m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m> <m>
• Strain
  MSM/Ms
• Allele 1
  b from C57BL/10Slc
• Allele 2
  m from MSM/Ms

CROSS Data

MC #mice	D13Mit27	D13Mit192	D13Mit159	D13Mit106	D13Mit29	D13Mit28	D13Mit108	Ap3b1	D13Mit160	D13Mit169	D13Mit258	D13Mit144	D13Mit128	D13Mit147	D13Mit36
597	m	m	m	m	m	m	m	m	m	m	m	m	m	m	m
584	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
6	b	m	m	m	m	m	m	m	m	m	m	m	m	m	m
4	m	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	m	m	m	m	m	m	m	m	m	m	m	m	m
5	m	m	b	b	b	b	b	b	b	b	b	b	b	b	b
2	m	m	m	b	b	b	b	b	b	b	b	b	b	b	b
5	m	m	m	m	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	b	m	m	m	m	m	m	m	m	m	m	m
4	m	m	m	m	m	b	b	b	b	b	b	b	b	b	b
3	b	b	b	b	b	m	m	m	m	m	m	m	m	m	m
1	b	b	b	b	b	b	b	b	m	m	m	m	m	m	m
25	m	m	m	m	m	m	m	m	m	m	m	b	b	b	b
19	b	b	b	b	b	b	b	b	b	b	b	m	m	m	m
2	b	b	b	b	b	b	b	b	b	b	b	b	m	m	m
3	m	m	m	m	m	m	m	m	m	m	m	m	m	b	b
3	b	b	b	b	b	b	b	b	b	b	b	b	b	m	m
13	m	m	m	m	m	m	m	m	m	m	m	m	m	m	b
9	b	b	b	b	b	b	b	b	b	b	b	b	b	b	m
134	.	.	.	.	m	m	m	m	m	m	m	m	.	.	.
14	.	.	.	.	b	b	b	b	b	b	b	b	.	.	.
3	.	.	.	.	b	m	m	m	m	m	m	m	.	.	.
1	.	.	.	.	m	b	b	b	b	b	b	b	.	.	.
2	.	.	.	.	b	b	b	b	m	m	m	m	.	.	.
5	.	.	.	.	b	b	b	b	b	b	b	m	.	.	.
2	.	.	.	.	m	m	m	m	m	m	m	b	.	.	.

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D13Mit27	D13Mit192	10	1287	0.777	0.245
D13Mit192	D13Mit159	6	1287	0.466	0.190
D13Mit159	D13Mit106	2	1287	0.155	0.110
D13Mit106	D13Mit29	6	1287	0.466	0.190
D13Mit29	D13Mit28	11	1448	0.760	0.228
D13Mit28	D13Mit106	0	1448	0.000	0.000
D13Mit106	Ap3b1	0	1448	0.000	0.000
Ap3b1	D13Mit160	3	1448	0.207	0.119
D13Mit160	D13Mit169	0	1448	0.000	0.000
D13Mit169	D13Mit258	0	1448	0.000	0.000
D13Mit258	D13Mit144	51	1448	3.522	0.484
D13Mit144	D13Mit128	2	1287	0.155	0.110
D13Mit128	D13Mit147	6	1287	0.466	0.190
D13Mit147	D13Mit36	22	1287	1.709	0.361