PCDHA13 Vertebrate HGNC

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Vertebrate Homology

Source

Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, zebrafish)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
- human
- mouse
- rat
- zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/30/2025 MGI 6.24

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences select all deselect all Go
human	PCDHA13	HGNC:8667 (HGNC) 56136 (Entrez Gene) 606319 (OMIM) PCDHA13 (Alliance of Genome Resources)	Chr5 q31.3	Chr5:140882124-141012347 (+) GRCh38		Q9Y5I0 (UniProt \| EBI) NM_031865 (RefSeq)
mouse	Pcdha12	MGI:1298370 (MGI) 192164 (Entrez Gene) Gene Tree Pcdha12 (Alliance of Genome Resources)	Chr18 19.46 cM	Chr18:37153283-37320710 (+) GRCm39		192164 (NCBI Gene Model) NP_619604 (RefSeq) NM_138663 (RefSeq)
zebrafish	pcdh1a3	ZDB-GENE-050202-3 (Zebrafish Model Organism Database) 497126 (Entrez Gene) pcdh1a3 (Alliance of Genome Resources)	Chr10			NP_001019268 (RefSeq) NM_001024097 (RefSeq)
	pcdh1a4	ZDB-GENE-050202-4 (Zebrafish Model Organism Database) 497127 (Entrez Gene) pcdh1a4 (Alliance of Genome Resources)	Chr10			NP_001019270 (RefSeq) NM_001024099 (RefSeq)
	pcdh1a6	ZDB-GENE-050203-2 (Zebrafish Model Organism Database) 497129 (Entrez Gene) pcdh1a6 (Alliance of Genome Resources)	Chr10			NP_001019272 (RefSeq) NM_001024101 (RefSeq)
	pcdh2a8	ZDB-GENE-041118-13 (Zebrafish Model Organism Database) 493596 (Entrez Gene) pcdh2a8 (Alliance of Genome Resources)	Chr14			NP_001009585 (RefSeq) NM_001009585 (RefSeq)
	pcdh2a10	ZDB-GENE-041118-14 (Zebrafish Model Organism Database) 493597 (Entrez Gene) pcdh2a10 (Alliance of Genome Resources)	Chr14			NP_001009587 (RefSeq) NM_001009587 (RefSeq)
	pcdh2a22	ZDB-GENE-041118-15 (Zebrafish Model Organism Database) 493601 (Entrez Gene) pcdh2a22 (Alliance of Genome Resources)	Chr14			NP_001009586 (RefSeq) NM_001009586 (RefSeq)
	pcdh2a26	ZDB-GENE-041118-1 (Zebrafish Model Organism Database) 141377658 (Entrez Gene) pcdh2a26 (Alliance of Genome Resources)	Chr14			NP_001009588 (RefSeq) NM_001009588 (RefSeq)
	pcdh2a27	ZDB-GENE-041118-2 (Zebrafish Model Organism Database) 493588 (Entrez Gene) pcdh2a27 (Alliance of Genome Resources)	Chr14			NP_001009592 (RefSeq) NM_001009592 (RefSeq)
	pcdh2a28	ZDB-GENE-041118-3 (Zebrafish Model Organism Database) 493590 (Entrez Gene) pcdh2a28 (Alliance of Genome Resources)	Chr14			NP_001008484 (RefSeq) NM_001008484 (RefSeq)
	pcdh2a30	ZDB-GENE-041118-5 (Zebrafish Model Organism Database) 493592 (Entrez Gene) pcdh2a30 (Alliance of Genome Resources)	Chr14			NP_001009593 (RefSeq) NM_001009593 (RefSeq)
	pcdh2a31	ZDB-GENE-041118-6 (Zebrafish Model Organism Database) 493593 (Entrez Gene) pcdh2a31 (Alliance of Genome Resources)	Chr14			NP_001009594 (RefSeq) NM_001009594 (RefSeq)
	pcdh2a32	ZDB-GENE-041118-7 (Zebrafish Model Organism Database) 493594 (Entrez Gene) pcdh2a32 (Alliance of Genome Resources)	Chr14			NP_001009595 (RefSeq) NM_001009595 (RefSeq)
	pcdh2a33	ZDB-GENE-041118-8 (Zebrafish Model Organism Database) 493595 (Entrez Gene) pcdh2a33 (Alliance of Genome Resources)	Chr14			NP_001009596 (RefSeq) NM_001009596 (RefSeq)
	pcdh2a34	ZDB-GENE-041118-9 (Zebrafish Model Organism Database) 493598 (Entrez Gene) pcdh2a34 (Alliance of Genome Resources)	Chr14			NP_001009589 (RefSeq) NM_001009589 (RefSeq)
	pcdh2a36	ZDB-GENE-041118-11 (Zebrafish Model Organism Database) 493600 (Entrez Gene) pcdh2a36 (Alliance of Genome Resources)	Chr14			NP_001009591 (RefSeq) NM_001009591 (RefSeq)
	pcdh2ab29	ZDB-GENE-041118-4 (Zebrafish Model Organism Database) 493591 (Entrez Gene) pcdh2ab29 (Alliance of Genome Resources)	Chr14			NP_001008483 (RefSeq) NM_001008483 (RefSeq)