Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PCDHGB5	HGNC:8712 (HGNC) 56101 (Entrez Gene) 606302 (OMIM) PCDHGB5 (Alliance of Genome Resources)	Chr5 q31.3	Chr5:141397947-141512975 (+) GRCh38		Q9Y5G0 (UniProt | EBI) NM_032099 (RefSeq)
mouse	Pcdhgb5	MGI:1935196 (MGI) 93702 (Entrez Gene) Gene Tree Pcdhgb5 (Alliance of Genome Resources)	Chr18 19.59 cM	Chr18:37864062-37974926 (+) GRCm39		ENSMUSG00000103749 (Ensembl Gene Model) ENSMUSP00000142010 (Ensembl) ENSMUST00000192535 (Ensembl)
zebrafish	LOC103909937	ZDB-GENE-231129-1 (Zebrafish Model Organism Database) 103909937 (Entrez Gene) LOC103909937 (Alliance of Genome Resources)	ChrUN			NP_001315629 (RefSeq) NM_001328700 (RefSeq)
	pcdh1g1	ZDB-GENE-050608-1 (Zebrafish Model Organism Database) 553983 (Entrez Gene) pcdh1g1 (Alliance of Genome Resources)	Chr10			NP_001018640 (RefSeq) NM_001020804 (RefSeq)
	pcdh1g2	ZDB-GENE-050608-2 (Zebrafish Model Organism Database) 553986 (Entrez Gene) pcdh1g2 (Alliance of Genome Resources)	Chr10			NP_001018872 (RefSeq) NM_001023578 (RefSeq)
	pcdh1g3	ZDB-GENE-050608-3 (Zebrafish Model Organism Database) 553987 (Entrez Gene) pcdh1g3 (Alliance of Genome Resources)	Chr10			NP_001018871 (RefSeq) NM_001023577 (RefSeq)
	pcdh1g18	ZDB-GENE-050609-13 (Zebrafish Model Organism Database) 554005 (Entrez Gene) pcdh1g18 (Alliance of Genome Resources)	Chr10			NP_001019288 (RefSeq) NM_001024117 (RefSeq)
	pcdh2g1	ZDB-GENE-050610-10 (Zebrafish Model Organism Database) 554047 (Entrez Gene) pcdh2g1 (Alliance of Genome Resources)	Chr14			NP_001019345 (RefSeq) NM_001024174 (RefSeq)
	pcdh2g2	ZDB-GENE-050610-21 (Zebrafish Model Organism Database) 554048 (Entrez Gene) pcdh2g2 (Alliance of Genome Resources)	Chr14			NP_001019346 (RefSeq) NM_001024175 (RefSeq)
	pcdh2g5	ZDB-GENE-050610-27 (Zebrafish Model Organism Database) 554053 (Entrez Gene) pcdh2g5 (Alliance of Genome Resources)	Chr14			NP_001019349 (RefSeq) NM_001024178 (RefSeq)
	pcdh2g6	ZDB-GENE-050610-28 (Zebrafish Model Organism Database) 554054 (Entrez Gene) pcdh2g6 (Alliance of Genome Resources)	Chr14			NP_001019350 (RefSeq) NM_001024179 (RefSeq)
	pcdh2g8	ZDB-GENE-050610-30 (Zebrafish Model Organism Database) 554056 (Entrez Gene) pcdh2g8 (Alliance of Genome Resources)	Chr14			NP_001019352 (RefSeq) NM_001024181 (RefSeq)
	pcdh2g9	ZDB-GENE-050610-31 (Zebrafish Model Organism Database) 554057 (Entrez Gene) pcdh2g9 (Alliance of Genome Resources)	Chr14			NP_001019353 (RefSeq) NM_001024182 (RefSeq)
	pcdh2g10	ZDB-GENE-050610-1 (Zebrafish Model Organism Database) 554058 (Entrez Gene) pcdh2g10 (Alliance of Genome Resources)	Chr14			NP_001019354 (RefSeq) NM_001024183 (RefSeq)
	pcdh2g12	ZDB-GENE-030131-3588 (Zebrafish Model Organism Database) 324865 (Entrez Gene) pcdh2g12 (Alliance of Genome Resources)	Chr14			NP_001019344 (RefSeq) NM_001024173 (RefSeq)
	pcdh2g13	ZDB-GENE-050610-3 (Zebrafish Model Organism Database) 554060 (Entrez Gene) pcdh2g13 (Alliance of Genome Resources)	Chr14			NP_001019356 (RefSeq) NM_001024185 (RefSeq)
	pcdh2g16	ZDB-GENE-050610-6 (Zebrafish Model Organism Database) 554063 (Entrez Gene) pcdh2g16 (Alliance of Genome Resources)	Chr14			NP_001019359 (RefSeq) NM_001024188 (RefSeq)
	pcdh2g28	ZDB-GENE-050610-19 (Zebrafish Model Organism Database) 554075 (Entrez Gene) pcdh2g28 (Alliance of Genome Resources)	Chr14			NP_001019371 (RefSeq) NM_001024200 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.