Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

 

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	TRAV8-1	HGNC:12146 (HGNC) 28685 (Entrez Gene) TRAV8-1 (Alliance of Genome Resources)	Chr14 q11.2	Chr14:21797287-21797886 (+) GRCh38		A0A0A6YYK1 (UniProt | EBI)
	TRAV8-3	HGNC:12148 (HGNC) 28683 (Entrez Gene) TRAV8-3 (Alliance of Genome Resources)	Chr14 q11.2	Chr14:21852558-21853006 (+) GRCh38		A0A0A6YYJ7 (UniProt | EBI)
mouse	Trav9-2	MGI:4439903 (MGI) 436479 (Entrez Gene) Gene Tree Trav9-2 (Alliance of Genome Resources)	Chr14 27.43 cM	Chr14:53828537-53828961 (+) GRCm39		436479 (NCBI Gene Model) A0A075B647 (UniProt | EBI)
rat	LOC688340	RGD:11446160 (Rat Genome Database) 688340 (Entrez Gene) LOC688340 (Alliance of Genome Resources)	Chr15
zebrafish	tradv1	ZDB-GENE-170601-119 (Zebrafish Model Organism Database) 368966 (Entrez Gene) tradv1 (Alliance of Genome Resources)	Chr2
	tradv2.0.1	ZDB-GENE-170601-120 (Zebrafish Model Organism Database) 368965 (Entrez Gene) tradv2.0.1 (Alliance of Genome Resources)	Chr2
	tradv2.0.3	ZDB-GENE-170601-122 (Zebrafish Model Organism Database) 368957 (Entrez Gene) tradv2.0.3 (Alliance of Genome Resources)	Chr2
	tradv15.0	ZDB-GENE-170601-153 (Zebrafish Model Organism Database) 368553 (Entrez Gene) tradv15.0 (Alliance of Genome Resources)	Chr2
	tradv19.0	ZDB-GENE-170601-157 (Zebrafish Model Organism Database) 368549 (Entrez Gene) tradv19.0 (Alliance of Genome Resources)	Chr2
	tradv20.0	ZDB-GENE-170601-158 (Zebrafish Model Organism Database) 368548 (Entrez Gene) tradv20.0 (Alliance of Genome Resources)	Chr2
	tradv24.0.2	ZDB-GENE-141212-67 (Zebrafish Model Organism Database) 368541 (Entrez Gene) tradv24.0.2 (Alliance of Genome Resources)	Chr2
	tradv24.0.3	ZDB-GENE-141212-49 (Zebrafish Model Organism Database) 368538 (Entrez Gene) tradv24.0.3 (Alliance of Genome Resources)	Chr2
	tradv24.0.4	ZDB-GENE-141212-44 (Zebrafish Model Organism Database) 368447 (Entrez Gene) tradv24.0.4 (Alliance of Genome Resources)	Chr2
	tradv24.0.5	ZDB-GENE-141212-35 (Zebrafish Model Organism Database) 368445 (Entrez Gene) tradv24.0.5 (Alliance of Genome Resources)	Chr2
	tradv25.0.1	ZDB-GENE-141212-24 (Zebrafish Model Organism Database) 368540 (Entrez Gene) tradv25.0.1 (Alliance of Genome Resources)	Chr2
	tradv25.0.2	ZDB-GENE-141212-40 (Zebrafish Model Organism Database) 368537 (Entrez Gene) tradv25.0.2 (Alliance of Genome Resources)	Chr2
	tradv25.0.3	ZDB-GENE-141212-30 (Zebrafish Model Organism Database) 368446 (Entrez Gene) tradv25.0.3 (Alliance of Genome Resources)	Chr2
	tradv25.0.4	ZDB-GENE-141212-52 (Zebrafish Model Organism Database) 368443 (Entrez Gene) tradv25.0.4 (Alliance of Genome Resources)	Chr2

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.