Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	H3C1	HGNC:4766 (HGNC) 8350 (Entrez Gene) 602810 (OMIM) H3C1 (Alliance of Genome Resources)	Chr6 p22.2	Chr6:26020451-26020958 (+) GRCh38		P68431 (UniProt | EBI) NM_003529 (RefSeq)
	H3C2	HGNC:4776 (HGNC) 8358 (Entrez Gene) 602819 (OMIM) H3C2 (Alliance of Genome Resources)	Chr6 p22.2	Chr6:26031589-26032099 (-) GRCh38		P68431 (UniProt | EBI) NM_003537 (RefSeq)
	H3C3	HGNC:4768 (HGNC) 8352 (Entrez Gene) 602812 (OMIM) H3C3 (Alliance of Genome Resources)	Chr6 p22.2	Chr6:26045384-26045869 (+) GRCh38		P68431 (UniProt | EBI) NM_003531 (RefSeq)
	H3C4	HGNC:4767 (HGNC) 8351 (Entrez Gene) 602811 (OMIM) H3C4 (Alliance of Genome Resources)	Chr6 p22.2	Chr6:26196784-26199293 (-) GRCh38		P68431 (UniProt | EBI) NM_003530 (RefSeq)
	H3C8	HGNC:4772 (HGNC) 8355 (Entrez Gene) 602815 (OMIM) H3C8 (Alliance of Genome Resources)	Chr6 p22.2	Chr6:26270918-26271413 (-) GRCh38		P68431 (UniProt | EBI) NM_003534 (RefSeq)
	H3C10	HGNC:4775 (HGNC) 8357 (Entrez Gene) 602818 (OMIM) H3C10 (Alliance of Genome Resources)	Chr6 p22.1	Chr6:27810051-27811300 (+) GRCh38		P68431 (UniProt | EBI) NM_003536 (RefSeq)
	H3C11	HGNC:4771 (HGNC) 8354 (Entrez Gene) 602814 (OMIM) H3C11 (Alliance of Genome Resources)	Chr6 p22.1	Chr6:27871845-27872346 (-) GRCh38		P68431 (UniProt | EBI) NM_003533 (RefSeq)
mouse	H3c1	MGI:2668828 (MGI) 360198 (Entrez Gene) Gene Tree H3c1 (Alliance of Genome Resources)	Chr13 9.91 cM	Chr13:23945868-23946369 (-) GRCm39		360198 (NCBI Gene Model) P68433 (UniProt | EBI) NM_013550 (RefSeq)
rat	H3c1	RGD:1598076 (Rat Genome Database) 679994 (Entrez Gene) H3c1 (Alliance of Genome Resources)	Chr17 p11			NP_001395691 (RefSeq) NM_001408762 (RefSeq)
	Hist1h2ail1	RGD:1311554 (Rat Genome Database) 291159 (Entrez Gene) Hist1h2ail1 (Alliance of Genome Resources)	Chr17 p11			Q6LED0 (UniProt | EBI) NM_001013056 (RefSeq)
	Hist1h3b	RGD:1591702 (Rat Genome Database) 680498 (Entrez Gene) Hist1h3b (Alliance of Genome Resources)	Chr17 p11			NP_001395694 (RefSeq) NM_001408765 (RefSeq)
zebrafish	si:ch211-113a14.27	ZDB-GENE-121214-143 (Zebrafish Model Organism Database) 103909889 (Entrez Gene) si:ch211-113a14.27 (Alliance of Genome Resources)	Chr25			XP_009296488 (RefSeq)
	si:ch1073-153i20.2	ZDB-GENE-160113-117 (Zebrafish Model Organism Database) 103911341 (Entrez Gene) si:ch1073-153i20.2 (Alliance of Genome Resources)	Chr7			XP_009301184 (RefSeq)
	zgc:173552	ZDB-GENE-080220-24 (Zebrafish Model Organism Database) 794406 (Entrez Gene) zgc:173552 (Alliance of Genome Resources)	Chr25			NP_001104686 (RefSeq) NM_001111216 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.