Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

 

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
mouse	Pcdhb14	MGI:2136749 (MGI) 93885 (Entrez Gene) Gene Tree Pcdhb14 (Alliance of Genome Resources)	Chr18 19.5 cM	Chr18:37580710-37584147 (+) GRCm39		93885 (NCBI Gene Model) Q6PB90 (UniProt | EBI) NM_053139 (RefSeq)
rat	Pcdhb14	RGD:1307591 (Rat Genome Database) 291647 (Entrez Gene) Pcdhb14 (Alliance of Genome Resources)	Chr18 p11			NP_001395668 (RefSeq) NM_001014776 (RefSeq)
zebrafish	pcdh1g1	ZDB-GENE-050608-1 (Zebrafish Model Organism Database) 553983 (Entrez Gene) pcdh1g1 (Alliance of Genome Resources)	Chr10			NP_001018640 (RefSeq) NM_001020804 (RefSeq)
	pcdh1g2	ZDB-GENE-050608-2 (Zebrafish Model Organism Database) 553986 (Entrez Gene) pcdh1g2 (Alliance of Genome Resources)	Chr10			NP_001018872 (RefSeq) NM_001023578 (RefSeq)
	pcdh1g3	ZDB-GENE-050608-3 (Zebrafish Model Organism Database) 553987 (Entrez Gene) pcdh1g3 (Alliance of Genome Resources)	Chr10			NP_001018871 (RefSeq) NM_001023577 (RefSeq)
	pcdh2g10	ZDB-GENE-050610-1 (Zebrafish Model Organism Database) 554058 (Entrez Gene) pcdh2g10 (Alliance of Genome Resources)	Chr14			NP_001019354 (RefSeq) NM_001024183 (RefSeq)
	pcdh2g17	ZDB-GENE-050610-7 (Zebrafish Model Organism Database) 554064 (Entrez Gene) pcdh2g17 (Alliance of Genome Resources)	Chr14			NP_001019360 (RefSeq) NM_001024189 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.