Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

 

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
mouse	Spopfm1	MGI:3643869 (MGI) 212727 (Entrez Gene) Gene Tree Spopfm1 (Alliance of Genome Resources)	Chr3 40.51 cM	Chr3:94172994-94174091 (+) GRCm39		ENSMUSG00000089696 (Ensembl Gene Model) ENSMUST00000159517 (Ensembl)
rat	LOC100911679	RGD:6491125 (Rat Genome Database) 100911679 (Entrez Gene) LOC100911679 (Alliance of Genome Resources)	Chr2			XP_003749384 (RefSeq)
	Spopfm2l1	RGD:1559714 (Rat Genome Database) 502570 (Entrez Gene) Spopfm2l1 (Alliance of Genome Resources)	Chr2			NP_001094466 (RefSeq) NM_001100996 (RefSeq)
	Spopfm2l2	RGD:1563667 (Rat Genome Database) 365855 (Entrez Gene) Spopfm2l2 (Alliance of Genome Resources)	Chr2			NP_001094455 (RefSeq) NM_001100985 (RefSeq)
	Tdpoz1-ps5	RGD:1560510 (Rat Genome Database) 295255 (Entrez Gene) Tdpoz1-ps5 (Alliance of Genome Resources)	Chr2 q34
	Tdpoz2l1	RGD:1560554 (Rat Genome Database) 502576 (Entrez Gene) Tdpoz2l1 (Alliance of Genome Resources)	Chr2 q34			NP_001389509 (RefSeq) NM_001402580 (RefSeq)
	Tdpoz2l4	RGD:1564313 (Rat Genome Database) 502566 (Entrez Gene) Tdpoz2l4 (Alliance of Genome Resources)	Chr2 q34			XP_003749379 (RefSeq)
zebrafish	spop	ZDB-GENE-040426-1378 (Zebrafish Model Organism Database) 100005514 (Entrez Gene) spop (Alliance of Genome Resources)	Chr3			Q7T330 (UniProt | EBI) NM_201130 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.