Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

 

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PCDHAC1	HGNC:8676 (HGNC) 56135 (Entrez Gene) 606320 (OMIM) PCDHAC1 (Alliance of Genome Resources)	Chr5 q31.3	Chr5:140926299-141012347 (+) GRCh38		Q9H158 (UniProt | EBI) NM_018898 (RefSeq)
mouse	Pcdhac1	MGI:1891442 (MGI) 353236 (Entrez Gene) Gene Tree Pcdhac1 (Alliance of Genome Resources)	Chr18 19.46 cM	Chr18:37223189-37320710 (+) GRCm39		353236 (NCBI Gene Model) NP_001003671 (RefSeq) NM_001003671 (RefSeq)
zebrafish	pcdhb	ZDB-GENE-020731-3 (Zebrafish Model Organism Database) 100333352 (Entrez Gene) pcdhb (Alliance of Genome Resources)	Chr14			XP_002664314 (RefSeq)
	si:ch73-233f7.1	ZDB-GENE-141215-5 (Zebrafish Model Organism Database) 100537710 (Entrez Gene) si:ch73-233f7.1 (Alliance of Genome Resources)	Chr14			NP_001352109 (RefSeq) NM_001365180 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.