Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ZZZ3
  • Mouse genes Zzz3
  • Rat genes Zzz3
  • Zfish genes zzz3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Zzz3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0070577	lysine-acetylated histone binding	ZZZ3	IDA		Human	PMID:30217978
Molecular Function	GO:0035064	methylated histone binding	ZZZ3	IDA		Human	PMID:30217978
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q92830	Human	PMID:20562830
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:P09022	Human	PMID:23088713
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:P61964	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q86V42	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:P61964	Human	PMID:27705803
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q08379	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q12933	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q5JST6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q96KQ4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q9H257-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ZZZ3	IPI	UniProtKB:Q9NRD5	Human	PMID:32296183
Cellular Component	GO:0140672	ATAC complex	ZZZ3	IDA		Human	PMID:19936620
Cellular Component	GO:0140672	ATAC complex	Zzz3	IDA		Mouse	MGI:MGI:6827473|PMID:19936620
Cellular Component	GO:0140672	ATAC complex	Zzz3	IDA		Mouse	PMID:20562830
Cellular Component	GO:0005730	nucleolus	ZZZ3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	ZZZ3	IDA		Human	GO_REF:0000052
Biological Process	GO:0006325	chromatin organization	ZZZ3	IMP		Human	PMID:30217978
Biological Process	GO:0044154	histone H3-K14 acetylation	ZZZ3	IDA		Human	PMID:19936620
Biological Process	GO:0051726	regulation of cell cycle	ZZZ3	IMP		Human	PMID:19103755
Biological Process	GO:0051726	regulation of cell cycle	Zzz3	IMP		Mouse	MGI:MGI:3835889|PMID:19103755
Biological Process	GO:0051302	regulation of cell division	ZZZ3	IDA		Human	PMID:20562830
Biological Process	GO:0051302	regulation of cell division	Zzz3	IDA		Mouse	MGI:MGI:4462728|PMID:20562830
Biological Process	GO:0006355	regulation of DNA-templated transcription	ZZZ3	IMP		Human	PMID:19936620
Biological Process	GO:0045995	regulation of embryonic development	Zzz3	IDA		Mouse	MGI:MGI:3835889|PMID:19103755
Biological Process	GO:0031063	regulation of histone deacetylation	ZZZ3	IMP		Human	PMID:20562830
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	ZZZ3	IDA		Human	PMID:22055187
Biological Process	GO:0090043	regulation of tubulin deacetylation	ZZZ3	IMP		Human	PMID:20562830

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern