Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes YTHDF1
  • Mouse genes Ythdf1
  • Rat genes Ythdf1
  • Zfish genes ythdf1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ythdf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003730	mRNA 3'-UTR binding	ythdf1	IDA		Zfish	PMID:31227602
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:24284625
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:26046440
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:26318451
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:28106072
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:28106076
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:31292544
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:32451507
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	YTHDF1	IDA		Human	PMID:32492408
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	Ythdf1	IDA		Mouse	MGI:MGI:6241448|PMID:30401835
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	Ythdf1	IDA		Mouse	MGI:MGI:6281071|PMID:30728504
Molecular Function	GO:1990247	N6-methyladenosine-containing RNA binding	Ythdf1	IDA		Mouse	MGI:MGI:6316558|PMID:30843071
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q7Z739	Human	PMID:28106072
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:A5D8V6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:B1ATL7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:O43482	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:P35548	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q08117-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q14847-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q6PEX3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q6UXA7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q8IUC2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q8IUC3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q8N1L9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q8NFV4-4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q92567-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q9ULV5-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q9Y5J3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	YTHDF1	IPI	UniProtKB:Q9Y5V3	Human	PMID:32296183
Molecular Function	GO:0043022	ribosome binding	YTHDF1	IDA		Human	PMID:26046440
Molecular Function	GO:0003723	RNA binding	YTHDF1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	YTHDF1	HDA		Human	PMID:22681889
Cellular Component	GO:0005737	cytoplasm	YTHDF1	IDA		Human	PMID:32492408
Cellular Component	GO:0005737	cytoplasm	Ythdf1	IDA		Mouse	MGI:MGI:6490006|PMID:32943573
Cellular Component	GO:0010494	cytoplasmic stress granule	YTHDF1	IDA		Human	PMID:32451507
Cellular Component	GO:0000932	P-body	YTHDF1	IDA		Human	PMID:32492408
Biological Process	GO:0007612	learning	Ythdf1	IMP		Mouse	MGI:MGI:6241448|PMID:30401835
Biological Process	GO:0007613	memory	Ythdf1	IMP		Mouse	MGI:MGI:6241448|PMID:30401835
Biological Process	GO:0061157	mRNA destabilization	YTHDF1	IDA		Human	PMID:32492408
Biological Process	GO:0061157	mRNA destabilization	Ythdf1	IMP		Mouse	MGI:MGI:6490006|PMID:32943573
Biological Process	GO:0070925	organelle assembly	YTHDF1	IDA		Human	PMID:31292544
Biological Process	GO:0045727	positive regulation of translation	YTHDF1	IMP		Human	PMID:28106072
Biological Process	GO:0045727	positive regulation of translation	YTHDF1	IMP		Human	PMID:28106076
Biological Process	GO:0045727	positive regulation of translation	Ythdf1	IDA		Mouse	MGI:MGI:6241448|PMID:30401835
Biological Process	GO:0045727	positive regulation of translation	Ythdf1	IDA		Mouse	MGI:MGI:6281071|PMID:30728504
Biological Process	GO:0045727	positive regulation of translation	Ythdf1	IDA		Mouse	MGI:MGI:6316558|PMID:30843071
Biological Process	GO:0045948	positive regulation of translational initiation	YTHDF1	IDA		Human	PMID:26046440
Biological Process	GO:0002577	regulation of antigen processing and presentation	Ythdf1	IMP		Mouse	MGI:MGI:6281071|PMID:30728504
Biological Process	GO:1902667	regulation of axon guidance	Ythdf1	IMP		Mouse	MGI:MGI:6316558|PMID:30843071
Biological Process	GO:1900271	regulation of long-term synaptic potentiation	Ythdf1	IMP		Mouse	MGI:MGI:6241448|PMID:30401835
Biological Process	GO:0043488	regulation of mRNA stability	YTHDF1	IDA		Human	PMID:32492408
Biological Process	GO:0043488	regulation of mRNA stability	Ythdf1	IMP		Mouse	MGI:MGI:6490006|PMID:32943573
Biological Process	GO:0034063	stress granule assembly	YTHDF1	IDA		Human	PMID:32451507

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern