Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VPS29
  • Mouse genes Vps29
  • Rat genes Vps29
  • Zfish genes vps29
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vps29

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O75436	Human	PMID:11102511
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:11102511
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O75436	Human	PMID:16732284
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O75436	Human	PMID:17891154
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:17891154
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q9UNH7	Human	PMID:19619496
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q9Y5X3	Human	PMID:19619496
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q92609	Human	PMID:20923837
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:24152121
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O60493	Human	PMID:24344282
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:P51149	Human	PMID:24344282
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q92609	Human	PMID:24603492
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:24747528
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:24980502
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:B9A6K1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:25502805
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O75436	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O75436	Human	PMID:27385586
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:27385586
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:O14972,UniProtKB:Q7Z3J2	Human	PMID:28892079
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:28892079
Molecular Function	GO:0005515	protein binding	VPS29	IPI	UniProtKB:Q96QK1	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	Vps29	IPI	UniProtKB:Q9EQH3	Mouse	MGI:MGI:5915260|PMID:15965486
Molecular Function	GO:0005515	protein binding	Vps29	IPI	UniProtKB:Q96QK1	Mouse	MGI:MGI:7327241|PMID:24152121
Molecular Function	GO:0005515	protein binding	Vps29	IPI	UniProtKB:Q96QK1|UniProtKB:Q9Y4E1	Mouse	MGI:MGI:5619734|PMID:23331060
Molecular Function	GO:0005515	protein binding	Vps29	IPI	UniProtKB:Q9EQH3	Mouse	MGI:MGI:4867115|PMID:21040701
Molecular Function	GO:0005515	protein binding	Vps29	IPI	UniProtKB:Q5T1M5|UniProtKB:Q92609|UniProtKB:Q96QK1|UniProtKB:Q9EQH3	Mouse	MGI:MGI:5317099|PMID:20923837
Cellular Component	GO:0005829	cytosol	VPS29	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	VPS29	IDA		Human	PMID:11102511
Cellular Component	GO:0005768	endosome	VPS29	IDA		Human	GO_REF:0000054
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	VPS29	IDA		Human	GO_REF:0000052
Cellular Component	GO:0030904	retromer complex	VPS29	IDA		Human	PMID:11102511
Cellular Component	GO:0030904	retromer complex	VPS29	IDA		Human	PMID:28892079
Cellular Component	GO:0030904	retromer complex	Vps29	IDA		Mouse	MGI:MGI:4867115|PMID:21040701
Cellular Component	GO:0030906	retromer, cargo-selective complex	VPS29	IDA		Human	PMID:27385586
Biological Process	GO:0032456	endocytic recycling	VPS29	IMP		Human	PMID:28892079

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern