Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VIRMA
  • Mouse genes Virma
  • Rat genes Virma
  • Zfish genes virma
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Virma

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	VIRMA	IPI	UniProtKB:O43809	Human	PMID:29507755
Molecular Function	GO:0005515	protein binding	VIRMA	IPI	UniProtKB:Q16630	Human	PMID:29507755
Molecular Function	GO:0003723	RNA binding	VIRMA	HDA		Human	PMID:22681889
Cellular Component	GO:0005737	cytoplasm	Virma	IDA		Mouse	MGI:MGI:6158697|PMID:29547716
Cellular Component	GO:0005829	cytosol	VIRMA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016604	nuclear body	VIRMA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	VIRMA	IDA		Human	PMID:24100041
Cellular Component	GO:0005654	nucleoplasm	VIRMA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	VIRMA	IDA		Human	PMID:24100041
Cellular Component	GO:0005634	nucleus	Virma	IDA		Mouse	MGI:MGI:6158697|PMID:29547716
Cellular Component	GO:0036396	RNA N6-methyladenosine methyltransferase complex	VIRMA	IPI		Human	PMID:29507755
Cellular Component	GO:0036396	RNA N6-methyladenosine methyltransferase complex	VIRMA	IDA		Human	PMID:29507755
Cellular Component	GO:0036396	RNA N6-methyladenosine methyltransferase complex	Virma	IDA		Mouse	MGI:MGI:6158697|PMID:29547716
Biological Process	GO:0110104	mRNA alternative polyadenylation	VIRMA	IDA		Human	PMID:29507755
Biological Process	GO:0080009	mRNA methylation	VIRMA	IMP		Human	PMID:24981863
Biological Process	GO:0080009	mRNA methylation	VIRMA	IDA		Human	PMID:29507755

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern