Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes USP39
  • Mouse genes Usp39
  • Rat genes Usp39
  • Zfish genes usp39
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Usp39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	USP39	IPI	UniProtKB:Q96SB4	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	USP39	IPI	UniProtKB:Q5S007	Human	PMID:29513927
Molecular Function	GO:0005515	protein binding	USP39	IPI	UniProtKB:Q5S007	Human	PMID:31046837
Molecular Function	GO:0005515	protein binding	USP39	IPI	UniProtKB:Q96SB4	Human	PMID:32707033
Cellular Component	GO:0005654	nucleoplasm	USP39	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	USP39	IDA		Human	PMID:11350945
Cellular Component	GO:0005634	nucleus	USP39	IDA		Human	PMID:26912367
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	USP39	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	USP39	IDA		Human	PMID:11350945
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	USP39	IDA		Human	PMID:26912367
Biological Process	GO:0048855	adenohypophysis morphogenesis	usp39	IMP	ZFIN:ZDB-MRPHLNO-110203-3	Zfish	PMID:21249182
Biological Process	GO:0048855	adenohypophysis morphogenesis	usp39	IMP	ZFIN:ZDB-GENO-110509-1	Zfish	PMID:21249182
Biological Process	GO:1904888	cranial skeletal system development	usp39	IMP	ZFIN:ZDB-MRPHLNO-100218-5	Zfish	PMID:28450118
Biological Process	GO:0000398	mRNA splicing, via spliceosome	USP39	IDA		Human	PMID:11350945
Biological Process	GO:0043484	regulation of RNA splicing	usp39	IMP	ZFIN:ZDB-GENO-110509-1	Zfish	PMID:21249182
Biological Process	GO:0000245	spliceosomal complex assembly	USP39	IMP		Human	PMID:11350945

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern