Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes USB1
  • Mouse genes Usb1
  • Rat genes Usb1
  • Zfish genes usb1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Usb1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0000175	3'-5'-RNA exonuclease activity	USB1	IDA		Human	PMID:23190533
Molecular Function	GO:0000175	3'-5'-RNA exonuclease activity	USB1	IDA		Human	PMID:30215753
Molecular Function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	USB1	IDA		Human	PMID:23022480
Molecular Function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	USB1	IDA		Human	PMID:23190533
Molecular Function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	USB1	IDA		Human	PMID:26213367
Molecular Function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	USB1	IDA		Human	PMID:28887445
Molecular Function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	USB1	IDA		Human	PMID:31832688
Molecular Function	GO:0005515	protein binding	USB1	IPI	UniProtKB:O43660|UniProtKB:Q99459|UniProtKB:Q9UMS4	Human	PMID:23022480
Cellular Component	GO:0045171	intercellular bridge	USB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	USB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	USB1	IDA		Human	PMID:22899009
Cellular Component	GO:0005634	nucleus	USB1	IDA		Human	PMID:23022480
Biological Process	GO:0030097	hemopoiesis	usb1	IMP	ZFIN:ZDB-MRPHLNO-170809-6	Zfish	PMID:26522474
Biological Process	GO:0030223	neutrophil differentiation	usb1	IGI	ZFIN:ZDB-GENE-060710-2,ZFIN:ZDB-MRPHLNO-160509-5	Zfish	PMID:25849198
Biological Process	GO:0030223	neutrophil differentiation	usb1	IGI	ZFIN:ZDB-GENE-060710-2,ZFIN:ZDB-MRPHLNO-160509-4	Zfish	PMID:25849198
Biological Process	GO:0030223	neutrophil differentiation	usb1	IMP	ZFIN:ZDB-MRPHLNO-160509-5	Zfish	PMID:25849198
Biological Process	GO:0030223	neutrophil differentiation	usb1	IMP	ZFIN:ZDB-MRPHLNO-160509-4	Zfish	PMID:25849198
Biological Process	GO:0043484	regulation of RNA splicing	usb1	IMP	ZFIN:ZDB-MRPHLNO-160509-5	Zfish	PMID:25849198
Biological Process	GO:0043484	regulation of RNA splicing	usb1	IMP	ZFIN:ZDB-MRPHLNO-160509-4	Zfish	PMID:25849198
Biological Process	GO:0008380	RNA splicing	USB1	IMP		Human	PMID:22899009
Biological Process	GO:0034472	snRNA 3'-end processing	USB1	IMP		Human	PMID:26213367
Biological Process	GO:0034477	U6 snRNA 3'-end processing	USB1	IMP		Human	PMID:22899009
Biological Process	GO:0034477	U6 snRNA 3'-end processing	USB1	IMP		Human	PMID:23022480
Biological Process	GO:0034477	U6 snRNA 3'-end processing	USB1	IDA		Human	PMID:23190533
Biological Process	GO:0034477	U6 snRNA 3'-end processing	USB1	IMP		Human	PMID:26213367

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern