Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UPF3A
  • Mouse genes Upf3a
  • Rat genes Upf3a
  • Zfish genes upf3a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Upf3a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	UPF3A	IDA		Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q92900	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9HAU5	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9Y5S9	Human	PMID:11546873
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9Y5S9	Human	PMID:11546874
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q92900	Human	PMID:12417715
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q92540	Human	PMID:14636577
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9HAU5	Human	PMID:14636577
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9BZI7-2	Human	PMID:19503078
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9HAU5	Human	PMID:19503078
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q9HAU5	Human	PMID:20479275
Molecular Function	GO:0005515	protein binding	UPF3A	IPI	UniProtKB:Q14147	Human	PMID:25220460
Molecular Function	GO:0005515	protein binding	upf3a	IPI	UniProtKB:Q7ZTX2	Zfish	PMID:30944473|ZFIN:ZDB-PUB-190405-14
Molecular Function	GO:0005515	protein binding	upf3a	IPI	ZFIN:ZDB-GENE-040426-2082	Zfish	PMID:30944473
Molecular Function	GO:0042162	telomeric DNA binding	UPF3A	IDA		Human	PMID:17916692
Cellular Component	GO:0005829	cytosol	UPF3A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035145	exon-exon junction complex	UPF3A	IDA		Human	PMID:16601204
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	UPF3A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0043005	neuron projection	Upf3a	IDA		Mouse	PMID:23821644
Cellular Component	GO:0005654	nucleoplasm	UPF3A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0032991	protein-containing complex	upf3a	IPI	ZFIN:ZDB-GENE-040426-886,ZFIN:ZDB-GENE-040426-2082	Zfish	PMID:30944473
Biological Process	GO:0001701	in utero embryonic development	Upf3a	IMP	MGI:6117430	Mouse	PMID:27040500
Biological Process	GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Upf3a	IGI	MGI:1915384	Mouse	PMID:27040500
Biological Process	GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Upf3a	IGI	MGI:107995	Mouse	PMID:27040500
Biological Process	GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Upf3a	IMP		Mouse	PMID:27040500
Biological Process	GO:0045727	positive regulation of translation	UPF3A	IDA		Human	PMID:16601204
Biological Process	GO:0007283	spermatogenesis	Upf3a	IMP	MGI:6117430	Mouse	PMID:27040500

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern