Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TUBGCP4
  • Mouse genes Tubgcp4
  • Rat genes Tubgcp4
  • Zfish genes tubgcp4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tubgcp4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TUBGCP4	IPI	UniProtKB:Q8N653	Human	PMID:19060904
Molecular Function	GO:0005515	protein binding	TUBGCP4	IPI	UniProtKB:Q8IVS8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TUBGCP4	IPI	UniProtKB:Q9NTX7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TUBGCP4	IPI	UniProtKB:Q9Y2D1	Human	PMID:26213385
Molecular Function	GO:0005515	protein binding	TUBGCP4	IPI	UniProtKB:Q8N653	Human	PMID:29892012
Cellular Component	GO:0005813	centrosome	TUBGCP4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005813	centrosome	TUBGCP4	IDA		Human	PMID:21399614
Cellular Component	GO:0016020	membrane	TUBGCP4	HDA		Human	PMID:19946888
Cellular Component	GO:0055037	recycling endosome	TUBGCP4	IDA		Human	PMID:24561039
Biological Process	GO:0042670	retinal cone cell differentiation	tubgcp4	IMP	ZFIN:ZDB-MRPHLNO-150618-5	Zfish	PMID:25817018
Biological Process	GO:0042670	retinal cone cell differentiation	tubgcp4	IMP	ZFIN:ZDB-MRPHLNO-150618-6	Zfish	PMID:25817018
Biological Process	GO:0060221	retinal rod cell differentiation	tubgcp4	IMP	ZFIN:ZDB-MRPHLNO-150618-5	Zfish	PMID:25817018

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern