Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM43,TRIM43B,TRIM49,TRIM49B,TRIM49C,TRIM49D1,TRIM49D2,TRIM51,TRIM51G,TRIM64,TRIM64B,TRIM64C,TRIM77
  • Mouse genes Trim43a
  • Rat genes Trim43a
  • Zfish genes si:ch211-114c12.5,si:ch211-120g10.1,si:ch73-364h19.2,si:dkey-18p12.4,si:dkey-219e21.2,zgc:194990
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim43a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:O95166	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:Q13501	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:Q14457	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:Q9H492	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:P61024	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:Q9H8M7	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:P61024	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:Q96HA1-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:Q9H8M7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM49	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	TRIM49C	IPI	UniProtKB:P0CW20	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM49C	IPI	UniProtKB:P61024	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM49C	IPI	UniProtKB:Q9H8M7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM43	IPI	UniProtKB:Q8TC92	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM43	IPI	UniProtKB:Q14451-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM43	IPI	UniProtKB:Q8TC92	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM43	IPI	UniProtKB:P37173	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	TRIM43	IPI	UniProtKB:P61086	Human	PMID:32814053
Molecular Function	GO:0019901	protein kinase binding	TRIM49	IPI	UniProtKB:O75385	Human	PMID:25127057

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern