Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TMEM39A
  • Mouse genes Tmem39a
  • Rat genes Tmem39a
  • Zfish genes tmem39a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tmem39a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TMEM39A	IPI	UniProtKB:O95486	Human	PMID:31806350
Molecular Function	GO:0005515	protein binding	TMEM39A	IPI	UniProtKB:Q15436	Human	PMID:31806350
Molecular Function	GO:0005515	protein binding	TMEM39A	IPI	UniProtKB:Q9NTJ5	Human	PMID:31806350
Molecular Function	GO:0005515	protein binding	TMEM39A	IPI	UniProtKB:P03304	Human	PMID:31849860
Cellular Component	GO:0005789	endoplasmic reticulum membrane	TMEM39A	IDA		Human	PMID:31806350
Biological Process	GO:1902902	negative regulation of autophagosome assembly	TMEM39A	IMP		Human	PMID:31806350
Biological Process	GO:1901097	negative regulation of autophagosome maturation	TMEM39A	IMP		Human	PMID:31806350
Biological Process	GO:0045070	positive regulation of viral genome replication	TMEM39A	IDA		Human	PMID:31849860

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern