Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TAF4B
  • Mouse genes Taf4b
  • Rat genes Taf4b
  • Zfish genes taf4b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Taf4b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	TAF4B	IDA		Human	PMID:15601843
Molecular Function	GO:0051059	NF-kappaB binding	TAF4B	IPI	UniProtKB:Q04206	Human	PMID:10849440
Molecular Function	GO:0005515	protein binding	Taf4b	IPI	UniProtKB:Q8CJ78	Mouse	MGI:MGI:6448002|PMID:31932482
Cellular Component	GO:0001650	fibrillar center	TAF4B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	TAF4B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005669	transcription factor TFIID complex	TAF4B	IDA		Human	PMID:29111974
Biological Process	GO:0042789	mRNA transcription by RNA polymerase II	TAF4B	IDA		Human	PMID:17884155
Biological Process	GO:2000648	positive regulation of stem cell proliferation	Taf4b	IMP		Mouse	MGI:MGI:5619438|PMID:23350932
Biological Process	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	TAF4B	IDA		Human	PMID:17884155
Biological Process	GO:0006468	protein phosphorylation	TAF4B	IDA		Human	PMID:15053879

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern