Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SVIP
  • Mouse genes Svip
  • Rat genes Svip
  • Zfish genes svip
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Svip

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0051117	ATPase binding	SVIP	IPI	UniProtKB:P55072	Human	PMID:17872946
Molecular Function	GO:0005515	protein binding	SVIP	IPI	UniProtKB:Q9BUN8	Human	PMID:17872946
Molecular Function	GO:0005515	protein binding	SVIP	IPI	UniProtKB:Q9BZV1	Human	PMID:32296183
Molecular Function	GO:0043621	protein self-association	SVIP	IMP		Human	PMID:24055875
Cellular Component	GO:0005789	endoplasmic reticulum membrane	SVIP	IDA		Human	PMID:17872946
Cellular Component	GO:0070062	extracellular exosome	SVIP	HDA		Human	PMID:20458337
Cellular Component	GO:0016020	membrane	SVIP	IDA		Human	PMID:17872946
Biological Process	GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process	SVIP	IMP		Human	PMID:17872946
Biological Process	GO:0031333	negative regulation of protein-containing complex assembly	SVIP	IMP		Human	PMID:17872946
Biological Process	GO:1904153	negative regulation of retrograde protein transport, ER to cytosol	SVIP	IMP		Human	PMID:25660456
Biological Process	GO:1904240	negative regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly	Svip	IDA		Rat	PMID:17000876|RGD:10047192
Biological Process	GO:0010508	positive regulation of autophagy	SVIP	IMP		Human	PMID:21909394
Biological Process	GO:1903061	positive regulation of protein lipidation	SVIP	IMP		Human	PMID:21909394

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern