Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNU13
  • Mouse genes Snu13
  • Rat genes LOC100359574,Snu13
  • Zfish genes snu13a,snu13b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snu13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0051117	ATPase binding	SNU13	IPI	UniProtKB:P60122	Human	PMID:17636026
Molecular Function	GO:0051117	ATPase binding	SNU13	IPI	UniProtKB:Q9WTM5	Human	PMID:17636026
Molecular Function	GO:0034512	box C/D RNA binding	SNU13	IDA		Human	PMID:11081632
Molecular Function	GO:0034512	box C/D RNA binding	Snu13	IMP		Mouse	MGI:MGI:5882914|PMID:11842104
Molecular Function	GO:0005515	protein binding	SNU13	IPI	UniProtKB:O75943	Human	PMID:10593953
Molecular Function	GO:0005515	protein binding	SNU13	IPI	UniProtKB:Q8WWY3	Human	PMID:17412961
Molecular Function	GO:0005515	protein binding	SNU13	IPI	UniProtKB:Q9UHK0	Human	PMID:17636026
Molecular Function	GO:0005515	protein binding	SNU13	IPI	UniProtKB:P04591:PRO_0000038596	Human	PMID:22190034
Molecular Function	GO:0005515	protein binding	SNU13	IPI	UniProtKB:Q16637	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	SNU13	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SNU13	HDA		Human	PMID:22681889
Molecular Function	GO:0030515	snoRNA binding	SNU13	IDA		Human	PMID:17636026
Molecular Function	GO:0034511	U3 snoRNA binding	SNU13	IDA		Human	PMID:11081632
Molecular Function	GO:0030621	U4 snRNA binding	SNU13	IDA		Human	PMID:11081632
Molecular Function	GO:0030621	U4 snRNA binding	SNU13	IDA		Human	PMID:16857676
Molecular Function	GO:0030622	U4atac snRNA binding	SNU13	IDA		Human	PMID:16857676
Molecular Function	GO:0030622	U4atac snRNA binding	SNU13	IDA		Human	PMID:21784869
Cellular Component	GO:0031428	box C/D RNP complex	SNU13	IDA		Human	PMID:11081632
Cellular Component	GO:0031428	box C/D RNP complex	Snu13	IMP		Mouse	MGI:MGI:5882914|PMID:11842104
Cellular Component	GO:0001651	dense fibrillar component	SNU13	IDA		Human	PMID:10593953
Cellular Component	GO:0005730	nucleolus	SNU13	IDA		Human	PMID:10593953
Cellular Component	GO:0005634	nucleus	SNU13	IDA		Human	PMID:28781166
Cellular Component	GO:0032991	protein-containing complex	SNU13	IDA		Human	PMID:17636026
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SNU13	IDA		Human	PMID:28781166
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNU13	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNU13	IDA		Human	PMID:26912367
Cellular Component	GO:0005690	U4atac snRNP	SNU13	IDA		Human	PMID:21784869
Biological Process	GO:0000492	box C/D snoRNP assembly	Snu13	IMP		Mouse	MGI:MGI:5882914|PMID:11842104
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SNU13	IDA		Human	PMID:28781166
Biological Process	GO:0007338	single fertilization	Snu13	IDA		Mouse	PMID:9114055
Biological Process	GO:0061053	somite development	snu13b	IMP	ZFIN:ZDB-MRPHLNO-131108-1	Zfish	PMID:23942517
Biological Process	GO:0061053	somite development	snu13b	IMP	ZFIN:ZDB-MRPHLNO-131108-2	Zfish	PMID:23942517

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern