Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNRPN
  • Mouse genes Snrpn
  • Rat genes Snrpn
  • Zfish genes snrpb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snrpn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNRPN	IPI	UniProtKB:O95400	Human	PMID:15105431
Molecular Function	GO:0005515	protein binding	SNRPN	IPI	UniProtKB:P52756	Human	PMID:18951082
Molecular Function	GO:0005515	protein binding	SNRPN	IPI	UniProtKB:O95400	Human	PMID:28514442
Cellular Component	GO:0005654	nucleoplasm	SNRPN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005685	U1 snRNP	Snrpn	IDA		Rat	PMID:8371979|RGD:1601359
Cellular Component	GO:0005686	U2 snRNP	Snrpn	IDA		Rat	PMID:8371979|RGD:1601359
Biological Process	GO:0009725	response to hormone	Snrpn	IEP		Rat	PMID:8089852|RGD:1601358

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern