Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNAPC5
  • Mouse genes Snapc5
  • Rat genes Snapc5
  • Zfish genes snapc5
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snapc5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q13287	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q13287	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:O60232	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:O94818-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:P35638-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:P37198	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q13287	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q4VCS5-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q8NFP7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q8WWE8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNAPC5	IPI	UniProtKB:Q9GZM8	Human	PMID:25416956
Molecular Function	GO:0016251	RNA polymerase II general transcription initiation factor activity	SNAPC5	IDA		Human	PMID:9732265
Molecular Function	GO:0000995	RNA polymerase III general transcription initiation factor activity	SNAPC5	IDA		Human	PMID:9732265
Cellular Component	GO:0016604	nuclear body	SNAPC5	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	SNAPC5	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SNAPC5	IDA		Human	GO_REF:0000052
Biological Process	GO:0042795	snRNA transcription by RNA polymerase II	SNAPC5	IDA		Human	PMID:9732265
Biological Process	GO:0042796	snRNA transcription by RNA polymerase III	SNAPC5	IDA		Human	PMID:9732265

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern